Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
BDNFP23560 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
BDNFP23560 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.29■□□□□ 0.2
BDNFP23560 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
BDNFP23560 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
BDNFP23560 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
BDNFP23560 AC020658.6-201ENST00000623564 1870 ntBASIC16.29■□□□□ 0.2
BDNFP23560 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.29■□□□□ 0.2
BDNFP23560 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BDNFP23560 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
BDNFP23560 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.28■□□□□ 0.2
BDNFP23560 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.28■□□□□ 0.2
BDNFP23560 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
BDNFP23560 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.28■□□□□ 0.2
BDNFP23560 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
BDNFP23560 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.28■□□□□ 0.2
BDNFP23560 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.28■□□□□ 0.2
BDNFP23560 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.28■□□□□ 0.2
BDNFP23560 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 AC092933.1-201ENST00000393644 945 ntBASIC16.28■□□□□ 0.2
BDNFP23560 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.28■□□□□ 0.2
BDNFP23560 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 RPL5P21-201ENST00000404620 815 ntBASIC16.28■□□□□ 0.2
BDNFP23560 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.28■□□□□ 0.2
BDNFP23560 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.28■□□□□ 0.2
BDNFP23560 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.28■□□□□ 0.2
BDNFP23560 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.28■□□□□ 0.2
BDNFP23560 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.28■□□□□ 0.2
BDNFP23560 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 AC004066.1-201ENST00000502488 802 ntBASIC16.28■□□□□ 0.2
BDNFP23560 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.28■□□□□ 0.2
BDNFP23560 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.28■□□□□ 0.2
BDNFP23560 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.28■□□□□ 0.2
BDNFP23560 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.28■□□□□ 0.2
BDNFP23560 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
BDNFP23560 AP005019.2-201ENST00000615104 511 ntBASIC16.28■□□□□ 0.2
BDNFP23560 MIR6775-201ENST00000617557 69 ntBASIC16.28■□□□□ 0.2
BDNFP23560 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.28■□□□□ 0.2
BDNFP23560 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.28■□□□□ 0.2
BDNFP23560 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.28■□□□□ 0.2
BDNFP23560 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.28■□□□□ 0.2
BDNFP23560 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.28■□□□□ 0.2
BDNFP23560 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BDNFP23560 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.28■□□□□ 0.2
BDNFP23560 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
BDNFP23560 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BDNFP23560 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.27■□□□□ 0.2
BDNFP23560 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BDNFP23560 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BDNFP23560 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BDNFP23560 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
BDNFP23560 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.27■□□□□ 0.2
BDNFP23560 CICP11-201ENST00000434745 2827 ntBASIC16.27■□□□□ 0.2
BDNFP23560 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
BDNFP23560 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
BDNFP23560 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.27■□□□□ 0.2
BDNFP23560 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.27■□□□□ 0.2
BDNFP23560 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
BDNFP23560 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
BDNFP23560 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 MIR6805-201ENST00000615055 62 ntBASIC16.27■□□□□ 0.2
BDNFP23560 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
BDNFP23560 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
BDNFP23560 PDIA3P1-201ENST00000471856 1510 ntBASIC16.27■□□□□ 0.2
BDNFP23560 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.27■□□□□ 0.2
BDNFP23560 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms