Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.89■□□□□ 0.13
HMGA1P17096 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.89■□□□□ 0.13
HMGA1P17096 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGA1P17096 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
HMGA1P17096 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.89■□□□□ 0.13
HMGA1P17096 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGA1P17096 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGA1P17096 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
HMGA1P17096 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.89■□□□□ 0.13
HMGA1P17096 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGA1P17096 CLUHP2-201ENST00000426660 1303 ntBASIC15.89■□□□□ 0.13
HMGA1P17096 AL359258.3-201ENST00000622910 2331 ntBASIC15.89■□□□□ 0.13
HMGA1P17096 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGA1P17096 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGA1P17096 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGA1P17096 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
HMGA1P17096 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGA1P17096 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGA1P17096 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
HMGA1P17096 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.88■□□□□ 0.13
HMGA1P17096 GPAA1P2-201ENST00000417923 928 ntBASIC15.88■□□□□ 0.13
HMGA1P17096 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.88■□□□□ 0.13
HMGA1P17096 AC006033.1-201ENST00000440505 426 ntBASIC15.88■□□□□ 0.13
HMGA1P17096 MTX1P1-201ENST00000440904 838 ntBASIC15.88■□□□□ 0.13
HMGA1P17096 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.88■□□□□ 0.13
HMGA1P17096 RN7SL713P-201ENST00000582127 302 ntBASIC15.88■□□□□ 0.13
HMGA1P17096 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGA1P17096 AC243960.2-201ENST00000600996 747 ntBASIC15.88■□□□□ 0.13
HMGA1P17096 OR10B1P-201ENST00000601666 907 ntBASIC15.88■□□□□ 0.13
HMGA1P17096 AC073413.1-201ENST00000603927 732 ntBASIC15.88■□□□□ 0.13
HMGA1P17096 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGA1P17096 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGA1P17096 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGA1P17096 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
HMGA1P17096 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGA1P17096 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGA1P17096 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
HMGA1P17096 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
HMGA1P17096 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGA1P17096 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
HMGA1P17096 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGA1P17096 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGA1P17096 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 RPS3-201ENST00000278572 907 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGA1P17096 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC15.87■□□□□ 0.13
HMGA1P17096 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGA1P17096 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGA1P17096 AC104306.2-201ENST00000451877 341 ntBASIC15.87■□□□□ 0.13
HMGA1P17096 MESTP3-201ENST00000503460 968 ntBASIC15.87■□□□□ 0.13
HMGA1P17096 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
HMGA1P17096 MIR3615-201ENST00000581999 87 ntBASIC15.87■□□□□ 0.13
HMGA1P17096 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
HMGA1P17096 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGA1P17096 AL096828.3-201ENST00000615354 462 ntBASIC15.87■□□□□ 0.13
HMGA1P17096 AC138466.3-201ENST00000619983 221 ntBASIC15.87■□□□□ 0.13
HMGA1P17096 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGA1P17096 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGA1P17096 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGA1P17096 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
HMGA1P17096 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGA1P17096 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGA1P17096 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGA1P17096 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HMGA1P17096 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms