Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
TPM1P09493 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM1P09493 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TPM1P09493 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
TPM1P09493 NIN-202ENST00000324330 4364 ntTSL 5 BASIC17.14■□□□□ 0.34
TPM1P09493 COCH-203ENST00000460581 2688 ntTSL 2 BASIC17.14■□□□□ 0.34
TPM1P09493 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.14■□□□□ 0.34
TPM1P09493 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
TPM1P09493 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TPM1P09493 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 CNTNAP3P2-201ENST00000617175 3861 ntBASIC17.14■□□□□ 0.33
TPM1P09493 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC17.14■□□□□ 0.33
TPM1P09493 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
TPM1P09493 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.14■□□□□ 0.33
TPM1P09493 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.14■□□□□ 0.33
TPM1P09493 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 HLA-H-201ENST00000383620 1096 ntBASIC17.14■□□□□ 0.33
TPM1P09493 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
TPM1P09493 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
TPM1P09493 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.14■□□□□ 0.33
TPM1P09493 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.14■□□□□ 0.33
TPM1P09493 EEF1DP4-201ENST00000446006 880 ntBASIC17.14■□□□□ 0.33
TPM1P09493 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.14■□□□□ 0.33
TPM1P09493 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC17.14■□□□□ 0.33
TPM1P09493 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TPM1P09493 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
TPM1P09493 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.13■□□□□ 0.33
TPM1P09493 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.13■□□□□ 0.33
TPM1P09493 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
TPM1P09493 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
TPM1P09493 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.13■□□□□ 0.33
TPM1P09493 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.13■□□□□ 0.33
TPM1P09493 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.13■□□□□ 0.33
TPM1P09493 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TPM1P09493 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.13■□□□□ 0.33
TPM1P09493 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.13■□□□□ 0.33
TPM1P09493 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.13■□□□□ 0.33
TPM1P09493 AL662844.1-201ENST00000546340 181 ntBASIC17.13■□□□□ 0.33
TPM1P09493 AC099522.2-201ENST00000607001 744 ntBASIC17.13■□□□□ 0.33
TPM1P09493 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TPM1P09493 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TPM1P09493 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.13■□□□□ 0.33
TPM1P09493 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.13■□□□□ 0.33
TPM1P09493 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
TPM1P09493 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TPM1P09493 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 DKFZP434A062-201ENST00000573103 5021 ntBASIC17.13■□□□□ 0.33
TPM1P09493 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TPM1P09493 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TPM1P09493 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC17.13■□□□□ 0.33
TPM1P09493 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC17.13■□□□□ 0.33
TPM1P09493 OS9-204ENST00000389146 2091 ntTSL 2 BASIC17.12■□□□□ 0.33
TPM1P09493 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.12■□□□□ 0.33
TPM1P09493 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TPM1P09493 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms