Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 MTHFR-210ENST00000641407 2387 ntBASIC11.72□□□□□ -0.53
HLA-DQA1P01909 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 RELA-227ENST00000615805 2236 ntTSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 AC134407.2-201ENST00000625089 1978 ntBASIC11.72□□□□□ -0.53
HLA-DQA1P01909 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 TP73-AS1-210ENST00000637775 1455 ntBASIC11.72□□□□□ -0.53
HLA-DQA1P01909 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 CCS-201ENST00000310190 942 ntTSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 BSG-214ENST00000614867 960 ntTSL 3 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 AP000867.4-201ENST00000641616 219 ntBASIC11.72□□□□□ -0.53
HLA-DQA1P01909 AF228730.7-201ENST00000641842 219 ntBASIC11.72□□□□□ -0.53
HLA-DQA1P01909 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 LRRFIP1P1-201ENST00000498774 2246 ntBASIC11.72□□□□□ -0.53
HLA-DQA1P01909 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
HLA-DQA1P01909 AC005562.1-201ENST00000583030 3219 ntBASIC11.71□□□□□ -0.53
HLA-DQA1P01909 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HLA-DQA1P01909 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms