Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.07■□□□□ 0
LDLRP01130 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.07■□□□□ 0
LDLRP01130 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.07■□□□□ 0
LDLRP01130 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC15.07■□□□□ 0
LDLRP01130 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.07■□□□□ 0
LDLRP01130 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
LDLRP01130 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
LDLRP01130 MRPS18AP1-201ENST00000414458 589 ntBASIC15.07■□□□□ 0
LDLRP01130 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.07■□□□□ 0
LDLRP01130 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.07■□□□□ 0
LDLRP01130 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.07■□□□□ 0
LDLRP01130 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.07■□□□□ 0
LDLRP01130 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.07■□□□□ 0
LDLRP01130 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.07■□□□□ 0
LDLRP01130 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.07■□□□□ 0
LDLRP01130 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
LDLRP01130 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
LDLRP01130 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.07■□□□□ 0
LDLRP01130 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.07■□□□□ 0
LDLRP01130 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
LDLRP01130 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.07■□□□□ 0
LDLRP01130 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 CU639417.3-201ENST00000624240 1404 ntBASIC15.07■□□□□ 0
LDLRP01130 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LDLRP01130 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.06■□□□□ 0
LDLRP01130 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
LDLRP01130 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
LDLRP01130 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
LDLRP01130 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
LDLRP01130 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.06■□□□□ 0
LDLRP01130 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.06■□□□□ 0
LDLRP01130 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.06■□□□□ 0
LDLRP01130 LINC00552-201ENST00000625151 2579 ntBASIC15.06■□□□□ 0
LDLRP01130 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.06■□□□□ 0
LDLRP01130 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.06■□□□□ 0
LDLRP01130 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
LDLRP01130 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.06■□□□□ 0
LDLRP01130 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.06■□□□□ 0
LDLRP01130 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.06■□□□□ 0
LDLRP01130 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.06■□□□□ 0
LDLRP01130 MIR4515-201ENST00000584082 81 ntBASIC15.06■□□□□ 0
LDLRP01130 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.06■□□□□ 0
LDLRP01130 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.06■□□□□ 0
LDLRP01130 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.06■□□□□ 0
LDLRP01130 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.06■□□□□ 0
LDLRP01130 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
LDLRP01130 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.06■□□□□ 0
LDLRP01130 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.06■□□□□ 0
LDLRP01130 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.06■□□□□ 0
LDLRP01130 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.06■□□□□ 0
LDLRP01130 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
LDLRP01130 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
LDLRP01130 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
LDLRP01130 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.05■□□□□ 0
LDLRP01130 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
LDLRP01130 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
LDLRP01130 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
LDLRP01130 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
LDLRP01130 AC139749.1-202ENST00000617529 3139 ntBASIC15.05■□□□□ -0
LDLRP01130 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.05■□□□□ -0
LDLRP01130 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms