Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.01■□□□□ 0.47
CDKL5O76039 MEP1AP4-201ENST00000423244 1087 ntBASIC18.01■□□□□ 0.47
CDKL5O76039 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.01■□□□□ 0.47
CDKL5O76039 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC18.01■□□□□ 0.47
CDKL5O76039 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CDKL5O76039 AL589987.1-201ENST00000453380 819 ntBASIC18.01■□□□□ 0.47
CDKL5O76039 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.01■□□□□ 0.47
CDKL5O76039 DOC2GP-202ENST00000514950 1163 ntBASIC18.01■□□□□ 0.47
CDKL5O76039 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.01■□□□□ 0.47
CDKL5O76039 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.01■□□□□ 0.47
CDKL5O76039 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.01■□□□□ 0.47
CDKL5O76039 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CDKL5O76039 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.01■□□□□ 0.47
CDKL5O76039 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18■□□□□ 0.47
CDKL5O76039 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18■□□□□ 0.47
CDKL5O76039 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CDKL5O76039 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 AC104457.1-201ENST00000401024 814 ntBASIC18■□□□□ 0.47
CDKL5O76039 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18■□□□□ 0.47
CDKL5O76039 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18■□□□□ 0.47
CDKL5O76039 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 INGX-202ENST00000489074 768 ntBASIC18■□□□□ 0.47
CDKL5O76039 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CDKL5O76039 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18■□□□□ 0.47
CDKL5O76039 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18■□□□□ 0.47
CDKL5O76039 RARRES2P5-201ENST00000564013 466 ntBASIC18■□□□□ 0.47
CDKL5O76039 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18■□□□□ 0.47
CDKL5O76039 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CDKL5O76039 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18■□□□□ 0.47
CDKL5O76039 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CDKL5O76039 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18■□□□□ 0.47
CDKL5O76039 ZBTB45P1-201ENST00000452761 1456 ntBASIC18■□□□□ 0.47
CDKL5O76039 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDKL5O76039 ZBED1P1-201ENST00000502364 1930 ntBASIC18■□□□□ 0.47
CDKL5O76039 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC18■□□□□ 0.47
CDKL5O76039 MIR600HG-201ENST00000449175 5984 ntBASIC18■□□□□ 0.47
CDKL5O76039 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.99■□□□□ 0.47
CDKL5O76039 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.99■□□□□ 0.47
CDKL5O76039 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 AC126755.1-201ENST00000525846 6405 ntBASIC17.99■□□□□ 0.47
CDKL5O76039 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CDKL5O76039 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CDKL5O76039 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CDKL5O76039 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.99■□□□□ 0.47
CDKL5O76039 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.99■□□□□ 0.47
CDKL5O76039 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.99■□□□□ 0.47
CDKL5O76039 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.99■□□□□ 0.47
CDKL5O76039 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.99■□□□□ 0.47
CDKL5O76039 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.99■□□□□ 0.47
CDKL5O76039 TPRX2P-201ENST00000535362 881 ntBASIC17.99■□□□□ 0.47
CDKL5O76039 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
CDKL5O76039 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.99■□□□□ 0.47
CDKL5O76039 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.99■□□□□ 0.47
CDKL5O76039 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.99■□□□□ 0.47
CDKL5O76039 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC17.99■□□□□ 0.47
CDKL5O76039 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 AC012508.2-201ENST00000567613 1472 ntBASIC17.99■□□□□ 0.47
CDKL5O76039 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.99■□□□□ 0.47
CDKL5O76039 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC17.99■□□□□ 0.47
CDKL5O76039 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDKL5O76039 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.99■□□□□ 0.47
CDKL5O76039 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CDKL5O76039 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms