Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.52■□□□□ 0.07
VPS9D1Q9Y2B5 LMO3-212ENST00000535535 1488 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
VPS9D1Q9Y2B5 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS9D1Q9Y2B5 AC097376.2-205ENST00000610159 5334 ntBASIC15.52■□□□□ 0.07
VPS9D1Q9Y2B5 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 AC241585.1-201ENST00000433527 519 ntBASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 TIMM17BP1-201ENST00000545713 516 ntBASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 Metazoa_SRP.12-201ENST00000553249 268 ntBASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 AC020892.1-201ENST00000559918 855 ntTSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 AL590133.2-202ENST00000561111 642 ntTSL 3 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 AL031058.1-201ENST00000561592 888 ntBASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 AL645728.2-202ENST00000641679 227 ntBASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 BTBD7P1-201ENST00000447253 1453 ntBASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS9D1Q9Y2B5 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 MIR943-201ENST00000401286 94 ntBASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 METTL21AP1-201ENST00000438852 635 ntBASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 AC097493.3-201ENST00000509725 367 ntBASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 AC073575.2-201ENST00000614212 627 ntBASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 AL109936.8-201ENST00000641772 604 ntBASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms