Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 AC007686.3-201ENST00000619017 3487 ntBASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 AC104457.1-201ENST00000401024 814 ntBASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 KRT18P43-201ENST00000469825 1281 ntBASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 RN7SL618P-201ENST00000477850 296 ntBASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 Z92544.3-201ENST00000624747 417 ntBASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LIMCH1Q9UPQ0 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 TUBB3P1-201ENST00000405796 1332 ntBASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 CNN2P2-201ENST00000443536 909 ntBASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 DNAJB3-202ENST00000449667 1266 ntBASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 CNN2P3-201ENST00000450201 906 ntBASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 SDHAP3-202ENST00000515467 728 ntBASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 AL136317.3-201ENST00000618497 906 ntBASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 AL109936.8-201ENST00000641772 604 ntBASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 GOLGA8DP-202ENST00000341390 2184 ntBASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 AC012508.2-201ENST00000567613 1472 ntBASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMCH1Q9UPQ0 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 REXO1L4P-201ENST00000605109 1937 ntBASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 TSEN15P1-201ENST00000423257 515 ntBASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 AC073592.8-201ENST00000624126 511 ntBASIC18.24■□□□□ 0.51
LIMCH1Q9UPQ0 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms