Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AL109954.1-202ENST00000564051 2148 ntBASIC15.11■□□□□ 0.01
VPS4AQ9UN37 AC090616.6-203ENST00000579186 1945 ntBASIC15.11■□□□□ 0.01
VPS4AQ9UN37 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS4AQ9UN37 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 AC092127.1-201ENST00000567093 3455 ntBASIC15.1■□□□□ 0.01
VPS4AQ9UN37 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 AC011495.1-201ENST00000498085 584 ntBASIC15.1■□□□□ 0.01
VPS4AQ9UN37 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 AL132655.2-201ENST00000596276 594 ntBASIC15.1■□□□□ 0.01
VPS4AQ9UN37 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 SPDYE12P-201ENST00000618416 771 ntBASIC15.1■□□□□ 0.01
VPS4AQ9UN37 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.1■□□□□ 0.01
VPS4AQ9UN37 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
VPS4AQ9UN37 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 OR2I1P-209ENST00000641730 5365 ntBASIC15.09■□□□□ 0.01
VPS4AQ9UN37 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 AC004987.2-201ENST00000395959 1148 ntBASIC15.09■□□□□ 0.01
VPS4AQ9UN37 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 RPS2P32-201ENST00000439199 892 ntBASIC15.09■□□□□ 0.01
VPS4AQ9UN37 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 RNA5SP410-201ENST00000516285 106 ntBASIC15.09■□□□□ 0.01
VPS4AQ9UN37 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 AL138828.2-201ENST00000615812 383 ntBASIC15.09■□□□□ 0.01
VPS4AQ9UN37 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VPS4AQ9UN37 BNIP3P1-202ENST00000550043 1585 ntBASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms