Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.79□□□□□ -0.2
MMP28Q9H239 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC13.79□□□□□ -0.2
MMP28Q9H239 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.79□□□□□ -0.2
MMP28Q9H239 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
MMP28Q9H239 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
MMP28Q9H239 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC13.79□□□□□ -0.2
MMP28Q9H239 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 BX842568.4-201ENST00000421222 227 ntBASIC13.79□□□□□ -0.2
MMP28Q9H239 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC13.79□□□□□ -0.2
MMP28Q9H239 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC13.79□□□□□ -0.2
MMP28Q9H239 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.79□□□□□ -0.2
MMP28Q9H239 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 CIPC-205ENST00000555437 566 ntTSL 3 BASIC13.79□□□□□ -0.2
MMP28Q9H239 MIR4751-201ENST00000578027 74 ntBASIC13.79□□□□□ -0.2
MMP28Q9H239 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC13.79□□□□□ -0.2
MMP28Q9H239 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 REXO1L3P-201ENST00000622202 1288 ntBASIC13.79□□□□□ -0.2
MMP28Q9H239 AC004790.2-201ENST00000623588 572 ntBASIC13.79□□□□□ -0.2
MMP28Q9H239 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.79□□□□□ -0.2
MMP28Q9H239 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 AC104109.2-201ENST00000602919 1418 ntBASIC13.79□□□□□ -0.2
MMP28Q9H239 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC13.79□□□□□ -0.2
MMP28Q9H239 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC13.79□□□□□ -0.2
MMP28Q9H239 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.79□□□□□ -0.2
MMP28Q9H239 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
MMP28Q9H239 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 TCAF1P1-201ENST00000414990 2232 ntBASIC13.78□□□□□ -0.2
MMP28Q9H239 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.78□□□□□ -0.2
MMP28Q9H239 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC13.78□□□□□ -0.2
MMP28Q9H239 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC13.78□□□□□ -0.2
MMP28Q9H239 PRSS29P-201ENST00000440800 595 ntBASIC13.78□□□□□ -0.2
MMP28Q9H239 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 IGHV3-22-201ENST00000520721 359 ntBASIC13.78□□□□□ -0.2
MMP28Q9H239 UNC93B6-202ENST00000528242 690 ntBASIC13.78□□□□□ -0.2
MMP28Q9H239 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC13.78□□□□□ -0.2
MMP28Q9H239 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC13.78□□□□□ -0.2
MMP28Q9H239 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
MMP28Q9H239 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
MMP28Q9H239 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
MMP28Q9H239 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.78□□□□□ -0.2
MMP28Q9H239 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.78□□□□□ -0.2
MMP28Q9H239 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.78□□□□□ -0.2
MMP28Q9H239 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
MMP28Q9H239 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms