Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FAM90A25P-201ENST00000528404 1395 ntBASIC14.95□□□□□ -0.02
VPS13AQ96RL7 AC239868.1-201ENST00000369385 493 ntBASIC14.95□□□□□ -0.02
VPS13AQ96RL7 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 MIR6816-201ENST00000620368 66 ntBASIC14.95□□□□□ -0.02
VPS13AQ96RL7 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 AC011477.6-201ENST00000604980 1927 ntBASIC14.94□□□□□ -0.02
VPS13AQ96RL7 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 AC090857.1-201ENST00000527400 390 ntBASIC14.94□□□□□ -0.02
VPS13AQ96RL7 POLD4-208ENST00000532830 904 ntTSL 3 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 ENPP7P8-202ENST00000527856 1345 ntBASIC14.94□□□□□ -0.02
VPS13AQ96RL7 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 HIST2H2BA-201ENST00000412169 381 ntBASIC14.94□□□□□ -0.02
VPS13AQ96RL7 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 LINC00634-202ENST00000505157 222 ntBASIC14.94□□□□□ -0.02
VPS13AQ96RL7 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 PHBP15-201ENST00000574228 665 ntBASIC14.94□□□□□ -0.02
VPS13AQ96RL7 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 AC244394.1-201ENST00000435000 1665 ntBASIC14.94□□□□□ -0.02
VPS13AQ96RL7 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VPS13AQ96RL7 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 SNX15-201ENST00000352068 771 ntTSL 5 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 TP53-221ENST00000615910 1149 ntTSL 5 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 SHC1P1-201ENST00000425230 1745 ntBASIC14.93□□□□□ -0.02
VPS13AQ96RL7 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VPS13AQ96RL7 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 AP002414.2-201ENST00000591780 3365 ntBASIC14.92□□□□□ -0.02
VPS13AQ96RL7 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 AC004466.1-201ENST00000599515 1080 ntBASIC14.92□□□□□ -0.02
VPS13AQ96RL7 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
VPS13AQ96RL7 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms