Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 MIR6727-201ENST00000620702 65 ntBASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
NKX2-3Q8TAU0 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 DBET-201ENST00000630918 3363 ntBASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 AL157414.3-201ENST00000624276 1954 ntBASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 C1QBPP1-201ENST00000400117 770 ntBASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 AC006033.1-201ENST00000440505 426 ntBASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 AL138799.1-201ENST00000448213 1675 ntBASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 AC006486.2-201ENST00000624246 2199 ntBASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
NKX2-3Q8TAU0 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
NKX2-3Q8TAU0 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
NKX2-3Q8TAU0 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 AC022532.1-201ENST00000624563 1728 ntBASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 AP000845.1-201ENST00000581677 2131 ntBASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 REXO1L2P-201ENST00000425429 2069 ntBASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 ZBTB12BP-201ENST00000314232 1122 ntBASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 AC104640.1-201ENST00000562617 2109 ntBASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms