Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 ACTG1P14-201ENST00000446382 1122 ntBASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 WASH6P-202ENST00000359512 1437 ntBASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 CNN2P11-201ENST00000429351 262 ntBASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PPP4R4Q6NUP7 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms