Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX4Q33E94 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RFX4Q33E94 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX4Q33E94 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RFX4Q33E94 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
RFX4Q33E94 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
RFX4Q33E94 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC14.49□□□□□ -0.09
RFX4Q33E94 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 ACE3P-201ENST00000423435 1973 ntBASIC14.49□□□□□ -0.09
RFX4Q33E94 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC14.49□□□□□ -0.09
RFX4Q33E94 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
RFX4Q33E94 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.49□□□□□ -0.09
RFX4Q33E94 AC011467.4-201ENST00000594891 528 ntBASIC14.49□□□□□ -0.09
RFX4Q33E94 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC14.49□□□□□ -0.09
RFX4Q33E94 SPTSSB-204ENST00000617024 1292 ntBASIC14.49□□□□□ -0.09
RFX4Q33E94 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.49□□□□□ -0.09
RFX4Q33E94 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
RFX4Q33E94 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
RFX4Q33E94 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.49□□□□□ -0.09
RFX4Q33E94 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.49□□□□□ -0.09
RFX4Q33E94 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.49□□□□□ -0.09
RFX4Q33E94 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFX4Q33E94 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
RFX4Q33E94 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.48□□□□□ -0.09
RFX4Q33E94 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
RFX4Q33E94 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
RFX4Q33E94 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
RFX4Q33E94 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.48□□□□□ -0.09
RFX4Q33E94 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
RFX4Q33E94 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.48□□□□□ -0.09
RFX4Q33E94 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
RFX4Q33E94 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.48□□□□□ -0.09
RFX4Q33E94 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.48□□□□□ -0.09
RFX4Q33E94 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.48□□□□□ -0.09
RFX4Q33E94 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC14.48□□□□□ -0.09
RFX4Q33E94 AC009078.2-202ENST00000463353 338 ntBASIC14.48□□□□□ -0.09
RFX4Q33E94 AC112191.1-201ENST00000523689 701 ntBASIC14.48□□□□□ -0.09
RFX4Q33E94 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
RFX4Q33E94 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
RFX4Q33E94 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.48□□□□□ -0.09
RFX4Q33E94 PDPK2P-202ENST00000562415 1191 ntBASIC14.48□□□□□ -0.09
RFX4Q33E94 AL138918.1-201ENST00000568306 659 ntBASIC14.48□□□□□ -0.09
RFX4Q33E94 AC061975.2-201ENST00000581722 295 ntBASIC14.48□□□□□ -0.09
RFX4Q33E94 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.48□□□□□ -0.09
RFX4Q33E94 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC14.48□□□□□ -0.09
RFX4Q33E94 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
RFX4Q33E94 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.48□□□□□ -0.09
RFX4Q33E94 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFX4Q33E94 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms