Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
CLRN1P58418 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.9□□□□□ -0.18
CLRN1P58418 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
CLRN1P58418 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CLRN1P58418 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 VMA21-202ENST00000370361 693 ntTSL 5 BASIC13.9□□□□□ -0.18
CLRN1P58418 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.9□□□□□ -0.18
CLRN1P58418 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.9□□□□□ -0.18
CLRN1P58418 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.9□□□□□ -0.18
CLRN1P58418 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 TIMM17BP1-201ENST00000545713 516 ntBASIC13.9□□□□□ -0.18
CLRN1P58418 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC13.9□□□□□ -0.18
CLRN1P58418 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC13.9□□□□□ -0.18
CLRN1P58418 LINC01115-203ENST00000606068 577 ntBASIC13.9□□□□□ -0.18
CLRN1P58418 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC13.9□□□□□ -0.18
CLRN1P58418 AC106028.4-201ENST00000614509 607 ntBASIC13.9□□□□□ -0.18
CLRN1P58418 AL390754.1-201ENST00000619088 582 ntBASIC13.9□□□□□ -0.18
CLRN1P58418 AL590560.3-201ENST00000623350 461 ntBASIC13.9□□□□□ -0.18
CLRN1P58418 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.9□□□□□ -0.18
CLRN1P58418 AF228730.6-201ENST00000641497 218 ntBASIC13.9□□□□□ -0.18
CLRN1P58418 AC084121.3-201ENST00000641716 218 ntBASIC13.9□□□□□ -0.18
CLRN1P58418 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.9□□□□□ -0.18
CLRN1P58418 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.9□□□□□ -0.18
CLRN1P58418 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.9□□□□□ -0.18
CLRN1P58418 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.9□□□□□ -0.18
CLRN1P58418 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CLRN1P58418 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.9□□□□□ -0.18
CLRN1P58418 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.9□□□□□ -0.18
CLRN1P58418 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.19
CLRN1P58418 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.9□□□□□ -0.19
CLRN1P58418 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.19
CLRN1P58418 AC126365.1-201ENST00000578585 1514 ntBASIC13.9□□□□□ -0.19
CLRN1P58418 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.9□□□□□ -0.19
CLRN1P58418 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
CLRN1P58418 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
CLRN1P58418 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CLRN1P58418 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.89□□□□□ -0.19
CLRN1P58418 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CLRN1P58418 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 KRT18P64-201ENST00000434946 1219 ntBASIC13.89□□□□□ -0.19
CLRN1P58418 AC044860.1-202ENST00000559481 777 ntBASIC13.89□□□□□ -0.19
CLRN1P58418 SSH2-210ENST00000582084 560 ntTSL 3 BASIC13.89□□□□□ -0.19
CLRN1P58418 AC093512.1-201ENST00000617969 520 ntBASIC13.89□□□□□ -0.19
CLRN1P58418 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC13.89□□□□□ -0.19
CLRN1P58418 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
CLRN1P58418 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CLRN1P58418 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CLRN1P58418 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLRN1P58418 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
CLRN1P58418 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.89□□□□□ -0.19
CLRN1P58418 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
CLRN1P58418 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms