Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH6P55285 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH6P55285 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH6P55285 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.16■□□□□ 0.18
CDH6P55285 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.16■□□□□ 0.18
CDH6P55285 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDH6P55285 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.16■□□□□ 0.18
CDH6P55285 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CDH6P55285 KRT18P43-201ENST00000469825 1281 ntBASIC16.16■□□□□ 0.18
CDH6P55285 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.16■□□□□ 0.18
CDH6P55285 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CDH6P55285 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CDH6P55285 AC004461.2-201ENST00000629517 803 ntBASIC16.16■□□□□ 0.18
CDH6P55285 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
CDH6P55285 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH6P55285 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.16■□□□□ 0.18
CDH6P55285 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CDH6P55285 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.16■□□□□ 0.18
CDH6P55285 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDH6P55285 LINC02228-204ENST00000642115 2962 ntBASIC16.16■□□□□ 0.18
CDH6P55285 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDH6P55285 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.16■□□□□ 0.18
CDH6P55285 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.16■□□□□ 0.18
CDH6P55285 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH6P55285 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CDH6P55285 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH6P55285 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH6P55285 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDH6P55285 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CDH6P55285 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
CDH6P55285 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
CDH6P55285 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.15■□□□□ 0.18
CDH6P55285 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.15■□□□□ 0.18
CDH6P55285 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.15■□□□□ 0.18
CDH6P55285 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CDH6P55285 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CDH6P55285 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.15■□□□□ 0.18
CDH6P55285 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.15■□□□□ 0.18
CDH6P55285 AC009477.1-201ENST00000452936 217 ntBASIC16.15■□□□□ 0.18
CDH6P55285 CYMP-203ENST00000474680 1263 ntBASIC16.15■□□□□ 0.18
CDH6P55285 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 TIMM17BP1-201ENST00000545713 516 ntBASIC16.15■□□□□ 0.18
CDH6P55285 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.15■□□□□ 0.18
CDH6P55285 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.15■□□□□ 0.18
CDH6P55285 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
CDH6P55285 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.15■□□□□ 0.18
CDH6P55285 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.15■□□□□ 0.18
CDH6P55285 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 AC138969.3-201ENST00000546612 1459 ntBASIC16.15■□□□□ 0.18
CDH6P55285 AC138932.2-201ENST00000548268 1459 ntBASIC16.15■□□□□ 0.18
CDH6P55285 AC126755.4-201ENST00000549796 1459 ntBASIC16.15■□□□□ 0.18
CDH6P55285 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CDH6P55285 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CDH6P55285 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH6P55285 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.14■□□□□ 0.18
CDH6P55285 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CDH6P55285 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH6P55285 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH6P55285 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH6P55285 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH6P55285 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH6P55285 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CDH6P55285 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CDH6P55285 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDH6P55285 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.14■□□□□ 0.17
CDH6P55285 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.14■□□□□ 0.17
CDH6P55285 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH6P55285 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDH6P55285 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH6P55285 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDH6P55285 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.14■□□□□ 0.17
CDH6P55285 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CDH6P55285 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.14■□□□□ 0.17
CDH6P55285 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms