Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.81■□□□□ 0.12
COL9A1P20849 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC15.81■□□□□ 0.12
COL9A1P20849 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 MIR6858-201ENST00000620733 67 ntBASIC15.81■□□□□ 0.12
COL9A1P20849 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.81■□□□□ 0.12
COL9A1P20849 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
COL9A1P20849 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.81■□□□□ 0.12
COL9A1P20849 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
COL9A1P20849 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.8■□□□□ 0.12
COL9A1P20849 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
COL9A1P20849 DRD5P1-201ENST00000456605 1438 ntBASIC15.8■□□□□ 0.12
COL9A1P20849 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 ENPP7P8-202ENST00000527856 1345 ntBASIC15.8■□□□□ 0.12
COL9A1P20849 AP000568.1-201ENST00000282964 442 ntBASIC15.8■□□□□ 0.12
COL9A1P20849 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.8■□□□□ 0.12
COL9A1P20849 AP000356.3-201ENST00000382243 753 ntBASIC15.8■□□□□ 0.12
COL9A1P20849 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 ELOCP6-201ENST00000429066 328 ntBASIC15.8■□□□□ 0.12
COL9A1P20849 ELOCP12-201ENST00000458706 328 ntBASIC15.8■□□□□ 0.12
COL9A1P20849 AC026410.3-201ENST00000514280 936 ntBASIC15.8■□□□□ 0.12
COL9A1P20849 AC242376.1-201ENST00000559033 726 ntBASIC15.8■□□□□ 0.12
COL9A1P20849 AC020892.1-201ENST00000559918 855 ntTSL 2 BASIC15.8■□□□□ 0.12
COL9A1P20849 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.8■□□□□ 0.12
COL9A1P20849 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC15.8■□□□□ 0.12
COL9A1P20849 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC15.8■□□□□ 0.12
COL9A1P20849 KLK13-207ENST00000596955 737 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 CDK7-214ENST00000626796 358 ntTSL 5 BASIC15.8■□□□□ 0.12
COL9A1P20849 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.8■□□□□ 0.12
COL9A1P20849 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
COL9A1P20849 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL9A1P20849 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL9A1P20849 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL9A1P20849 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 AL157791.1-201ENST00000553667 1699 ntBASIC15.79■□□□□ 0.12
COL9A1P20849 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.79■□□□□ 0.12
COL9A1P20849 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.79■□□□□ 0.12
COL9A1P20849 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.79■□□□□ 0.12
COL9A1P20849 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC15.79■□□□□ 0.12
COL9A1P20849 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
COL9A1P20849 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
COL9A1P20849 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC15.79■□□□□ 0.12
COL9A1P20849 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
COL9A1P20849 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.79■□□□□ 0.12
COL9A1P20849 HNRNPA1P42-201ENST00000458678 957 ntBASIC15.79■□□□□ 0.12
COL9A1P20849 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 TSPAN5-202ENST00000505184 1191 ntTSL 2 BASIC15.79■□□□□ 0.12
COL9A1P20849 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
COL9A1P20849 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC15.79■□□□□ 0.12
COL9A1P20849 AC005730.2-201ENST00000564549 1184 ntBASIC15.79■□□□□ 0.12
COL9A1P20849 TMF1P1-201ENST00000576058 373 ntBASIC15.79■□□□□ 0.12
COL9A1P20849 AC004223.2-201ENST00000590309 544 ntBASIC15.79■□□□□ 0.12
COL9A1P20849 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.79■□□□□ 0.12
COL9A1P20849 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 AD000864.1-201ENST00000624076 2295 ntBASIC15.79■□□□□ 0.12
COL9A1P20849 AL138709.1-201ENST00000614840 1693 ntBASIC15.79■□□□□ 0.12
COL9A1P20849 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.79■□□□□ 0.12
COL9A1P20849 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.79■□□□□ 0.12
COL9A1P20849 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL9A1P20849 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL9A1P20849 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.78■□□□□ 0.12
COL9A1P20849 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.78■□□□□ 0.12
COL9A1P20849 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
COL9A1P20849 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms