Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A1P12109 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A1P12109 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
COL6A1P12109 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A1P12109 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A1P12109 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A1P12109 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
COL6A1P12109 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A1P12109 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A1P12109 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A1P12109 AC004066.1-201ENST00000502488 802 ntBASIC16.91■□□□□ 0.3
COL6A1P12109 IGLV3-15-201ENST00000518356 244 ntBASIC16.91■□□□□ 0.3
COL6A1P12109 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A1P12109 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
COL6A1P12109 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
COL6A1P12109 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A1P12109 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A1P12109 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A1P12109 AC090164.2-201ENST00000611487 516 ntBASIC16.91■□□□□ 0.3
COL6A1P12109 WT1-AS_6.1-201ENST00000614919 121 ntBASIC16.91■□□□□ 0.3
COL6A1P12109 AC138466.3-201ENST00000619983 221 ntBASIC16.91■□□□□ 0.3
COL6A1P12109 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A1P12109 AL805961.1-201ENST00000642026 753 ntBASIC16.91■□□□□ 0.3
COL6A1P12109 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A1P12109 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A1P12109 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A1P12109 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A1P12109 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A1P12109 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A1P12109 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A1P12109 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
COL6A1P12109 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A1P12109 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A1P12109 MTHFR-217ENST00000641820 1569 ntBASIC16.9■□□□□ 0.3
COL6A1P12109 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
COL6A1P12109 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
COL6A1P12109 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
COL6A1P12109 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A1P12109 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
COL6A1P12109 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.9■□□□□ 0.3
COL6A1P12109 RN7SL8P-201ENST00000461771 266 ntBASIC16.9■□□□□ 0.3
COL6A1P12109 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A1P12109 AC022616.1-201ENST00000518688 554 ntBASIC16.9■□□□□ 0.3
COL6A1P12109 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 NEU3-205ENST00000531619 582 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A1P12109 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A1P12109 AL160314.3-201ENST00000556041 767 ntBASIC16.9■□□□□ 0.3
COL6A1P12109 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.9■□□□□ 0.3
COL6A1P12109 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A1P12109 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A1P12109 AC092171.5-201ENST00000608012 942 ntBASIC16.9■□□□□ 0.3
COL6A1P12109 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A1P12109 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
COL6A1P12109 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.9■□□□□ 0.3
COL6A1P12109 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A1P12109 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A1P12109 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A1P12109 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A1P12109 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC16.89■□□□□ 0.3
COL6A1P12109 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A1P12109 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.89■□□□□ 0.3
COL6A1P12109 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A1P12109 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A1P12109 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A1P12109 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.89■□□□□ 0.3
COL6A1P12109 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A1P12109 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.89■□□□□ 0.29
COL6A1P12109 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A1P12109 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A1P12109 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A1P12109 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A1P12109 AC022188.1-201ENST00000620960 1664 ntBASIC16.89■□□□□ 0.29
COL6A1P12109 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.89■□□□□ 0.29
COL6A1P12109 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A1P12109 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
COL6A1P12109 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A1P12109 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A1P12109 RN7SKP214-201ENST00000364208 315 ntBASIC16.89■□□□□ 0.29
COL6A1P12109 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.89■□□□□ 0.29
COL6A1P12109 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.89■□□□□ 0.29
COL6A1P12109 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms