Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AGAP14-201ENST00000624701 2060 ntBASIC20.09■□□□□ 0.81
COL3A1P02461 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
COL3A1P02461 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.09■□□□□ 0.81
COL3A1P02461 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.09■□□□□ 0.81
COL3A1P02461 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
COL3A1P02461 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC20.09■□□□□ 0.81
COL3A1P02461 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
COL3A1P02461 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC20.09■□□□□ 0.81
COL3A1P02461 NCK2-206ENST00000522586 490 ntTSL 5 BASIC20.09■□□□□ 0.81
COL3A1P02461 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC20.09■□□□□ 0.81
COL3A1P02461 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC20.09■□□□□ 0.81
COL3A1P02461 AL358472.3-201ENST00000608147 415 ntBASIC20.09■□□□□ 0.81
COL3A1P02461 PRKN-211ENST00000615065 261 ntTSL 5 BASIC20.09■□□□□ 0.81
COL3A1P02461 AL096828.3-201ENST00000615354 462 ntBASIC20.09■□□□□ 0.81
COL3A1P02461 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
COL3A1P02461 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
COL3A1P02461 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
COL3A1P02461 ZEB1-AS1-208ENST00000607166 2503 ntBASIC20.09■□□□□ 0.81
COL3A1P02461 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC20.09■□□□□ 0.81
COL3A1P02461 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
COL3A1P02461 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC20.09■□□□□ 0.81
COL3A1P02461 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL3A1P02461 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
COL3A1P02461 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC20.08■□□□□ 0.81
COL3A1P02461 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL3A1P02461 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL3A1P02461 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL3A1P02461 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL3A1P02461 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL3A1P02461 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC20.08■□□□□ 0.81
COL3A1P02461 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
COL3A1P02461 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
COL3A1P02461 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL3A1P02461 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL3A1P02461 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC20.08■□□□□ 0.81
COL3A1P02461 AC023310.1-201ENST00000554836 735 ntBASIC20.08■□□□□ 0.81
COL3A1P02461 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC20.08■□□□□ 0.81
COL3A1P02461 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC20.08■□□□□ 0.81
COL3A1P02461 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC20.08■□□□□ 0.81
COL3A1P02461 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC20.08■□□□□ 0.81
COL3A1P02461 ABBA01031663.1-201ENST00000635630 790 ntBASIC20.08■□□□□ 0.81
COL3A1P02461 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
COL3A1P02461 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
COL3A1P02461 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL3A1P02461 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC20.08■□□□□ 0.8
COL3A1P02461 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
COL3A1P02461 AC023157.3-201ENST00000619086 2088 ntBASIC20.08■□□□□ 0.8
COL3A1P02461 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL3A1P02461 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
COL3A1P02461 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC20.08■□□□□ 0.8
COL3A1P02461 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL3A1P02461 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL3A1P02461 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC20.07■□□□□ 0.8
COL3A1P02461 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC20.07■□□□□ 0.8
COL3A1P02461 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 MIR326-201ENST00000362220 95 ntBASIC20.07■□□□□ 0.8
COL3A1P02461 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC20.07■□□□□ 0.8
COL3A1P02461 ACTBP11-201ENST00000436287 1126 ntBASIC20.07■□□□□ 0.8
COL3A1P02461 Z93015.1-201ENST00000451718 390 ntBASIC20.07■□□□□ 0.8
COL3A1P02461 RNF41-210ENST00000552244 716 ntTSL 3 BASIC20.07■□□□□ 0.8
COL3A1P02461 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC20.07■□□□□ 0.8
COL3A1P02461 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC20.07■□□□□ 0.8
COL3A1P02461 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
COL3A1P02461 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC20.07■□□□□ 0.8
COL3A1P02461 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC20.07■□□□□ 0.8
COL3A1P02461 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC20.07■□□□□ 0.8
COL3A1P02461 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.07■□□□□ 0.8
COL3A1P02461 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC20.07■□□□□ 0.8
COL3A1P02461 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
COL3A1P02461 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL3A1P02461 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL3A1P02461 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC20.06■□□□□ 0.8
COL3A1P02461 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms