Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC188H7C350 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC188H7C350 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC188H7C350 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CCDC188H7C350 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC188H7C350 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC188H7C350 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC188H7C350 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC188H7C350 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC188H7C350 AC027601.5-201ENST00000624065 2482 ntBASIC16.14■□□□□ 0.18
CCDC188H7C350 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CCDC188H7C350 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
CCDC188H7C350 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CCDC188H7C350 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
CCDC188H7C350 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CCDC188H7C350 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CCDC188H7C350 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC188H7C350 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.14■□□□□ 0.17
CCDC188H7C350 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.14■□□□□ 0.17
CCDC188H7C350 SPDYE11-202ENST00000450699 704 ntBASIC16.14■□□□□ 0.17
CCDC188H7C350 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
CCDC188H7C350 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCDC188H7C350 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC188H7C350 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.14■□□□□ 0.17
CCDC188H7C350 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC188H7C350 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.14■□□□□ 0.17
CCDC188H7C350 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.14■□□□□ 0.17
CCDC188H7C350 SPDYE9P-201ENST00000570642 692 ntBASIC16.14■□□□□ 0.17
CCDC188H7C350 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.14■□□□□ 0.17
CCDC188H7C350 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC188H7C350 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 SPDYE10P-202ENST00000612005 668 ntBASIC16.14■□□□□ 0.17
CCDC188H7C350 SPDYE8P-202ENST00000612377 668 ntBASIC16.14■□□□□ 0.17
CCDC188H7C350 AC084121.4-201ENST00000641598 221 ntBASIC16.14■□□□□ 0.17
CCDC188H7C350 AC092865.6-201ENST00000642101 219 ntBASIC16.14■□□□□ 0.17
CCDC188H7C350 AF228730.8-201ENST00000642140 221 ntBASIC16.14■□□□□ 0.17
CCDC188H7C350 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CCDC188H7C350 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.14■□□□□ 0.17
CCDC188H7C350 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 AC104581.4-201ENST00000623126 3052 ntBASIC16.14■□□□□ 0.17
CCDC188H7C350 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.14■□□□□ 0.17
CCDC188H7C350 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCDC188H7C350 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
CCDC188H7C350 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCDC188H7C350 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 AC018442.1-201ENST00000421439 2061 ntBASIC16.14■□□□□ 0.17
CCDC188H7C350 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC188H7C350 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC188H7C350 BEND3P1-201ENST00000421591 1944 ntBASIC16.13■□□□□ 0.17
CCDC188H7C350 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.13■□□□□ 0.17
CCDC188H7C350 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC188H7C350 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC188H7C350 AC018529.2-202ENST00000611482 3087 ntBASIC16.13■□□□□ 0.17
CCDC188H7C350 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC188H7C350 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC188H7C350 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC188H7C350 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC188H7C350 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
CCDC188H7C350 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC188H7C350 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
CCDC188H7C350 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC188H7C350 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC188H7C350 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC188H7C350 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC188H7C350 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.13■□□□□ 0.17
CCDC188H7C350 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC188H7C350 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC188H7C350 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.13■□□□□ 0.17
CCDC188H7C350 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC188H7C350 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC188H7C350 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC188H7C350 AC026120.1-201ENST00000611536 926 ntBASIC16.13■□□□□ 0.17
CCDC188H7C350 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC188H7C350 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC188H7C350 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC188H7C350 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC188H7C350 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC188H7C350 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC188H7C350 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms