Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HIF3AQ9Y2N7 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 MYO15B-237ENST00000642007 4893 ntBASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HIF3AQ9Y2N7 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 AP002414.2-201ENST00000591780 3365 ntBASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 ZBED1P1-201ENST00000502364 1930 ntBASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 AL133267.1-201ENST00000398220 340 ntBASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 AC109322.1-201ENST00000524499 1264 ntBASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 WASH3P-207ENST00000560956 1394 ntBASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
HIF3AQ9Y2N7 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms