Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 AC041040.2-201ENST00000622926 2899 ntBASIC15.67■□□□□ 0.1
TRIM4Q9C037 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 AL355306.1-201ENST00000415580 579 ntBASIC15.67■□□□□ 0.1
TRIM4Q9C037 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 AL513480.1-201ENST00000451731 511 ntBASIC15.67■□□□□ 0.1
TRIM4Q9C037 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 CR383656.2-201ENST00000548656 2254 ntBASIC15.67■□□□□ 0.1
TRIM4Q9C037 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 GPAA1P2-202ENST00000606848 1787 ntBASIC15.67■□□□□ 0.1
TRIM4Q9C037 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM4Q9C037 AC129492.6-201ENST00000611383 1305 ntBASIC15.67■□□□□ 0.1
TRIM4Q9C037 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM4Q9C037 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 AC006486.2-201ENST00000624246 2199 ntBASIC15.66■□□□□ 0.1
TRIM4Q9C037 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 AL671277.1-201ENST00000429656 993 ntBASIC15.66■□□□□ 0.1
TRIM4Q9C037 RBPMS2P1-201ENST00000437762 623 ntBASIC15.66■□□□□ 0.1
TRIM4Q9C037 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 AC005412.3-201ENST00000580309 715 ntBASIC15.66■□□□□ 0.1
TRIM4Q9C037 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 ACTL9-202ENST00000612068 1252 ntBASIC15.66■□□□□ 0.1
TRIM4Q9C037 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.66■□□□□ 0.1
TRIM4Q9C037 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TRIM4Q9C037 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms