Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAIPQ9BWF2 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 AC069224.1-201ENST00000566372 1715 ntBASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 AC092933.1-201ENST00000393644 945 ntBASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 BAATP1-201ENST00000412284 1225 ntBASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 AC012441.1-201ENST00000446669 685 ntBASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 AC005252.2-201ENST00000624630 1141 ntBASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 PDIA3P1-201ENST00000471856 1510 ntBASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 AC063926.3-201ENST00000624734 5658 ntBASIC17.01■□□□□ 0.31
TRAIPQ9BWF2 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17■□□□□ 0.31
TRAIPQ9BWF2 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
TRAIPQ9BWF2 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17■□□□□ 0.31
TRAIPQ9BWF2 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17■□□□□ 0.31
TRAIPQ9BWF2 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
TRAIPQ9BWF2 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17■□□□□ 0.31
TRAIPQ9BWF2 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
TRAIPQ9BWF2 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17■□□□□ 0.31
TRAIPQ9BWF2 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17■□□□□ 0.31
TRAIPQ9BWF2 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
TRAIPQ9BWF2 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17■□□□□ 0.31
TRAIPQ9BWF2 AP000812.2-201ENST00000538934 718 ntBASIC17■□□□□ 0.31
TRAIPQ9BWF2 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAIPQ9BWF2 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms