Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PTCHD1Q96NR3 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 AL596257.1-201ENST00000641463 2694 ntBASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 AP006294.1-201ENST00000415407 339 ntBASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 ELK1P1-201ENST00000485699 580 ntBASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 AC092552.1-201ENST00000547243 906 ntBASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 AL596325.1-201ENST00000563991 1082 ntBASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 CTBP2P3-201ENST00000585629 1255 ntBASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 AC000095.1-201ENST00000603208 874 ntBASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.65□□□□□ -0.06
PTCHD1Q96NR3 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 AC136621.1-201ENST00000624017 2304 ntBASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 AC098614.1-201ENST00000368528 745 ntBASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 RPL13AP25-201ENST00000484130 612 ntBASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 AC126755.1-201ENST00000525846 6405 ntBASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
PTCHD1Q96NR3 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms