Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB4Q8WW32 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB4Q8WW32 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB4Q8WW32 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB4Q8WW32 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB4Q8WW32 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB4Q8WW32 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB4Q8WW32 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
HMGB4Q8WW32 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB4Q8WW32 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB4Q8WW32 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.53■□□□□ 0.08
HMGB4Q8WW32 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 TPM3P8-201ENST00000330554 643 ntBASIC15.52■□□□□ 0.08
HMGB4Q8WW32 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 ACTBP8-201ENST00000403258 1108 ntBASIC15.52■□□□□ 0.08
HMGB4Q8WW32 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.52■□□□□ 0.08
HMGB4Q8WW32 AC025181.2-201ENST00000606994 802 ntBASIC15.52■□□□□ 0.08
HMGB4Q8WW32 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.52■□□□□ 0.07
HMGB4Q8WW32 PCDHB19P-201ENST00000570871 2371 ntBASIC15.51■□□□□ 0.07
HMGB4Q8WW32 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 AC114812.1-204ENST00000449669 728 ntBASIC15.51■□□□□ 0.07
HMGB4Q8WW32 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 AC104982.3-201ENST00000581995 514 ntBASIC15.51■□□□□ 0.07
HMGB4Q8WW32 EEF1DP1-201ENST00000585891 896 ntBASIC15.51■□□□□ 0.07
HMGB4Q8WW32 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 LRRC59-203ENST00000576448 1531 ntBASIC15.51■□□□□ 0.07
HMGB4Q8WW32 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 PCDHA14-201ENST00000506751 2298 ntBASIC15.51■□□□□ 0.07
HMGB4Q8WW32 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms