Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.2■□□□□ 0.66
RC3H1Q5TC82 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
RC3H1Q5TC82 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 MIR4750-201ENST00000584564 56 ntBASIC19.19■□□□□ 0.66
RC3H1Q5TC82 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 INE2-201ENST00000630399 1874 ntBASIC19.19■□□□□ 0.66
RC3H1Q5TC82 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 PCDHA12-202ENST00000613593 2588 ntBASIC19.19■□□□□ 0.66
RC3H1Q5TC82 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RC3H1Q5TC82 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 AC009093.2-202ENST00000620513 2079 ntBASIC19.18■□□□□ 0.66
RC3H1Q5TC82 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 NOC2LP1-201ENST00000450578 752 ntBASIC19.18■□□□□ 0.66
RC3H1Q5TC82 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 NAP1L6-202ENST00000641404 1222 ntBASIC19.18■□□□□ 0.66
RC3H1Q5TC82 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RC3H1Q5TC82 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 TNRC18P3-201ENST00000441896 2691 ntBASIC19.17■□□□□ 0.66
RC3H1Q5TC82 AC012441.2-201ENST00000444843 739 ntBASIC19.17■□□□□ 0.66
RC3H1Q5TC82 RCC2P8-201ENST00000502779 1035 ntBASIC19.17■□□□□ 0.66
RC3H1Q5TC82 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 AC132192.2-201ENST00000596206 1147 ntBASIC19.17■□□□□ 0.66
RC3H1Q5TC82 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 COX6A1P2-201ENST00000620597 330 ntBASIC19.17■□□□□ 0.66
RC3H1Q5TC82 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RC3H1Q5TC82 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms