Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.36■□□□□ 0.05
SRP54P61011 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SRP54P61011 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.36■□□□□ 0.05
SRP54P61011 AC112504.1-201ENST00000623415 1841 ntBASIC15.36■□□□□ 0.05
SRP54P61011 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.36■□□□□ 0.05
SRP54P61011 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.35■□□□□ 0.05
SRP54P61011 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.35■□□□□ 0.05
SRP54P61011 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.35■□□□□ 0.05
SRP54P61011 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
SRP54P61011 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.35■□□□□ 0.05
SRP54P61011 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
SRP54P61011 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.35■□□□□ 0.05
SRP54P61011 BOLA2P3-201ENST00000404566 256 ntBASIC15.35■□□□□ 0.05
SRP54P61011 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.35■□□□□ 0.05
SRP54P61011 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.35■□□□□ 0.05
SRP54P61011 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.35■□□□□ 0.05
SRP54P61011 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 AC026410.3-201ENST00000514280 936 ntBASIC15.35■□□□□ 0.05
SRP54P61011 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.35■□□□□ 0.05
SRP54P61011 AC009486.1-201ENST00000569860 813 ntBASIC15.35■□□□□ 0.05
SRP54P61011 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
SRP54P61011 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.35■□□□□ 0.05
SRP54P61011 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.35■□□□□ 0.05
SRP54P61011 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
SRP54P61011 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
SRP54P61011 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
SRP54P61011 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.35■□□□□ 0.05
SRP54P61011 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.35■□□□□ 0.05
SRP54P61011 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.35■□□□□ 0.05
SRP54P61011 DRD5P1-201ENST00000456605 1438 ntBASIC15.34■□□□□ 0.05
SRP54P61011 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
SRP54P61011 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.34■□□□□ 0.05
SRP54P61011 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.34■□□□□ 0.05
SRP54P61011 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SRP54P61011 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.34■□□□□ 0.05
SRP54P61011 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
SRP54P61011 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.34■□□□□ 0.05
SRP54P61011 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
SRP54P61011 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.34■□□□□ 0.05
SRP54P61011 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SRP54P61011 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
SRP54P61011 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
SRP54P61011 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.34■□□□□ 0.05
SRP54P61011 CLUHP6-201ENST00000580789 941 ntBASIC15.34■□□□□ 0.05
SRP54P61011 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
SRP54P61011 AC093813.1-201ENST00000605066 256 ntBASIC15.34■□□□□ 0.05
SRP54P61011 AL022328.1-201ENST00000610050 478 ntBASIC15.34■□□□□ 0.05
SRP54P61011 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.34■□□□□ 0.05
SRP54P61011 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.34■□□□□ 0.05
SRP54P61011 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
SRP54P61011 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
SRP54P61011 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.34■□□□□ 0.05
SRP54P61011 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SRP54P61011 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.34■□□□□ 0.05
SRP54P61011 AL603832.2-201ENST00000566195 2125 ntBASIC15.34■□□□□ 0.05
SRP54P61011 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.34■□□□□ 0.05
SRP54P61011 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SRP54P61011 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
SRP54P61011 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SRP54P61011 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.33■□□□□ 0.05
SRP54P61011 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SRP54P61011 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.33■□□□□ 0.05
SRP54P61011 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.33■□□□□ 0.05
SRP54P61011 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
SRP54P61011 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SRP54P61011 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
SRP54P61011 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.33■□□□□ 0.04
SRP54P61011 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SRP54P61011 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms