Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.28■□□□□ 0.52
BRCA1P38398 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 AC009090.5-201ENST00000624886 2285 ntBASIC18.28■□□□□ 0.52
BRCA1P38398 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC18.28■□□□□ 0.52
BRCA1P38398 AC003102.2-201ENST00000589195 1469 ntBASIC18.28■□□□□ 0.52
BRCA1P38398 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.28■□□□□ 0.52
BRCA1P38398 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC18.28■□□□□ 0.52
BRCA1P38398 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 BANF1P3-201ENST00000412556 261 ntBASIC18.28■□□□□ 0.52
BRCA1P38398 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC18.28■□□□□ 0.52
BRCA1P38398 DDX39AP1-201ENST00000445147 1181 ntBASIC18.28■□□□□ 0.52
BRCA1P38398 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC18.28■□□□□ 0.52
BRCA1P38398 AC114947.1-202ENST00000514136 344 ntBASIC18.28■□□□□ 0.52
BRCA1P38398 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC18.28■□□□□ 0.52
BRCA1P38398 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC18.28■□□□□ 0.52
BRCA1P38398 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC18.28■□□□□ 0.52
BRCA1P38398 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BRCA1P38398 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
BRCA1P38398 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
BRCA1P38398 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
BRCA1P38398 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.27■□□□□ 0.52
BRCA1P38398 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
BRCA1P38398 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
BRCA1P38398 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.27■□□□□ 0.52
BRCA1P38398 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.27■□□□□ 0.52
BRCA1P38398 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BRCA1P38398 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
BRCA1P38398 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
BRCA1P38398 KRT17P4-201ENST00000429445 819 ntBASIC18.27■□□□□ 0.52
BRCA1P38398 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC18.27■□□□□ 0.52
BRCA1P38398 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC18.27■□□□□ 0.52
BRCA1P38398 AP000911.2-201ENST00000534330 502 ntBASIC18.27■□□□□ 0.52
BRCA1P38398 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC18.27■□□□□ 0.52
BRCA1P38398 RPS5-204ENST00000598098 536 ntTSL 2 BASIC18.27■□□□□ 0.52
BRCA1P38398 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BRCA1P38398 AC127383.1-201ENST00000444697 1800 ntBASIC18.27■□□□□ 0.52
BRCA1P38398 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BRCA1P38398 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
BRCA1P38398 AC018470.1-201ENST00000624790 3129 ntBASIC18.27■□□□□ 0.52
BRCA1P38398 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BRCA1P38398 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
BRCA1P38398 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.27■□□□□ 0.52
BRCA1P38398 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
BRCA1P38398 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
BRCA1P38398 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.27■□□□□ 0.51
BRCA1P38398 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
BRCA1P38398 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.27■□□□□ 0.51
BRCA1P38398 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.27■□□□□ 0.51
BRCA1P38398 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
BRCA1P38398 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC18.26■□□□□ 0.51
BRCA1P38398 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.26■□□□□ 0.51
BRCA1P38398 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC18.26■□□□□ 0.51
BRCA1P38398 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
BRCA1P38398 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
BRCA1P38398 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
BRCA1P38398 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.26■□□□□ 0.51
BRCA1P38398 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC18.26■□□□□ 0.51
BRCA1P38398 TLE1P1-201ENST00000422965 589 ntBASIC18.26■□□□□ 0.51
BRCA1P38398 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 SKA2-202ENST00000437036 625 ntTSL 2 BASIC18.26■□□□□ 0.51
BRCA1P38398 PGAM1P12-201ENST00000505622 748 ntBASIC18.26■□□□□ 0.51
BRCA1P38398 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC18.26■□□□□ 0.51
BRCA1P38398 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC18.26■□□□□ 0.51
BRCA1P38398 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC18.26■□□□□ 0.51
BRCA1P38398 RPS15-202ENST00000585665 467 ntTSL 3 BASIC18.26■□□□□ 0.51
BRCA1P38398 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC18.26■□□□□ 0.51
BRCA1P38398 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 USP4-203ENST00000415188 1454 ntTSL 3 BASIC18.26■□□□□ 0.51
BRCA1P38398 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
BRCA1P38398 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
BRCA1P38398 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
BRCA1P38398 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
BRCA1P38398 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.25■□□□□ 0.51
BRCA1P38398 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC18.25■□□□□ 0.51
BRCA1P38398 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BRCA1P38398 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BRCA1P38398 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms