Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC015936.2-201ENST00000593177 259 ntBASIC12.04□□□□□ -0.48
HOXD3P31249 BNIP3P29-201ENST00000598302 571 ntBASIC12.04□□□□□ -0.48
HOXD3P31249 AC011447.5-201ENST00000616168 564 ntBASIC12.04□□□□□ -0.48
HOXD3P31249 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXD3P31249 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.04□□□□□ -0.48
HOXD3P31249 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXD3P31249 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXD3P31249 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC12.04□□□□□ -0.48
HOXD3P31249 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXD3P31249 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXD3P31249 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXD3P31249 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXD3P31249 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXD3P31249 MYB-242ENST00000618728 3545 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXD3P31249 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
HOXD3P31249 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXD3P31249 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
HOXD3P31249 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXD3P31249 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXD3P31249 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXD3P31249 AC018665.1-201ENST00000622927 1362 ntBASIC12.04□□□□□ -0.48
HOXD3P31249 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC12.04□□□□□ -0.48
HOXD3P31249 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXD3P31249 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
HOXD3P31249 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 AL121723.1-201ENST00000445194 1519 ntBASIC12.03□□□□□ -0.48
HOXD3P31249 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 ANKRD19P-201ENST00000338192 862 ntBASIC12.03□□□□□ -0.48
HOXD3P31249 FAM86MP-201ENST00000340703 885 ntBASIC12.03□□□□□ -0.48
HOXD3P31249 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC12.03□□□□□ -0.48
HOXD3P31249 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 KRT43P-201ENST00000434019 910 ntBASIC12.03□□□□□ -0.48
HOXD3P31249 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC12.03□□□□□ -0.48
HOXD3P31249 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC12.03□□□□□ -0.48
HOXD3P31249 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.03□□□□□ -0.48
HOXD3P31249 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC12.03□□□□□ -0.48
HOXD3P31249 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 AMT-233ENST00000636522 1620 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
HOXD3P31249 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
HOXD3P31249 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC12.03□□□□□ -0.48
HOXD3P31249 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
HOXD3P31249 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
HOXD3P31249 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXD3P31249 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXD3P31249 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXD3P31249 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC12.02□□□□□ -0.48
HOXD3P31249 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms