Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 STRN-202ENST00000379213 2254 ntTSL 5 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 FAM58DP-201ENST00000428076 619 ntBASIC11.9□□□□□ -0.5
HLA-DMBP28068 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 EEF1DP4-201ENST00000446006 880 ntBASIC11.9□□□□□ -0.5
HLA-DMBP28068 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 AC025678.2-201ENST00000562061 970 ntBASIC11.9□□□□□ -0.5
HLA-DMBP28068 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 SPIB-207ENST00000597855 564 ntTSL 4 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HLA-DMBP28068 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
HLA-DMBP28068 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DMBP28068 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DMBP28068 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.51
HLA-DMBP28068 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DMBP28068 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.51
HLA-DMBP28068 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC11.9□□□□□ -0.51
HLA-DMBP28068 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DMBP28068 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
HLA-DMBP28068 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.51
HLA-DMBP28068 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 SBF1P1-201ENST00000444527 5631 ntBASIC11.89□□□□□ -0.51
HLA-DMBP28068 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 AL627223.1-201ENST00000416693 442 ntBASIC11.89□□□□□ -0.51
HLA-DMBP28068 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 RFPL4AP1-201ENST00000530883 850 ntBASIC11.89□□□□□ -0.51
HLA-DMBP28068 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 BANF1P1-201ENST00000553684 263 ntBASIC11.89□□□□□ -0.51
HLA-DMBP28068 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC11.89□□□□□ -0.51
HLA-DMBP28068 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HLA-DMBP28068 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms