Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
BDNFP23560 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
BDNFP23560 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
BDNFP23560 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.33■□□□□ 0.21
BDNFP23560 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.33■□□□□ 0.21
BDNFP23560 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
BDNFP23560 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
BDNFP23560 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
BDNFP23560 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
BDNFP23560 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
BDNFP23560 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
BDNFP23560 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 AP001889.1-201ENST00000525414 633 ntBASIC16.33■□□□□ 0.2
BDNFP23560 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.33■□□□□ 0.2
BDNFP23560 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.33■□□□□ 0.2
BDNFP23560 AC017083.2-201ENST00000608069 979 ntBASIC16.33■□□□□ 0.2
BDNFP23560 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.33■□□□□ 0.2
BDNFP23560 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.33■□□□□ 0.2
BDNFP23560 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 AC134312.5-201ENST00000568031 1313 ntBASIC16.33■□□□□ 0.2
BDNFP23560 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.33■□□□□ 0.2
BDNFP23560 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.33■□□□□ 0.2
BDNFP23560 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
BDNFP23560 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
BDNFP23560 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
BDNFP23560 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.33■□□□□ 0.2
BDNFP23560 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
BDNFP23560 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
BDNFP23560 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.33■□□□□ 0.2
BDNFP23560 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
BDNFP23560 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BDNFP23560 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
BDNFP23560 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.32■□□□□ 0.2
BDNFP23560 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
BDNFP23560 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 AC234783.1-201ENST00000441761 496 ntBASIC16.32■□□□□ 0.2
BDNFP23560 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.32■□□□□ 0.2
BDNFP23560 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.32■□□□□ 0.2
BDNFP23560 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.32■□□□□ 0.2
BDNFP23560 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.32■□□□□ 0.2
BDNFP23560 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.32■□□□□ 0.2
BDNFP23560 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.32■□□□□ 0.2
BDNFP23560 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.32■□□□□ 0.2
BDNFP23560 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
BDNFP23560 AL022328.1-201ENST00000610050 478 ntBASIC16.32■□□□□ 0.2
BDNFP23560 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
BDNFP23560 FER1L4-210ENST00000615531 5998 ntBASIC16.32■□□□□ 0.2
BDNFP23560 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.32■□□□□ 0.2
BDNFP23560 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BDNFP23560 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.31■□□□□ 0.2
BDNFP23560 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
BDNFP23560 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.31■□□□□ 0.2
BDNFP23560 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.31■□□□□ 0.2
BDNFP23560 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.31■□□□□ 0.2
BDNFP23560 LINC00554-201ENST00000564841 3011 ntBASIC16.31■□□□□ 0.2
BDNFP23560 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
BDNFP23560 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BDNFP23560 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms