Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC15.67■□□□□ 0.1
COL6A3P12111 RN7SL121P-201ENST00000584223 273 ntBASIC15.67■□□□□ 0.1
COL6A3P12111 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A3P12111 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
COL6A3P12111 NEK4P3-201ENST00000604859 544 ntBASIC15.67■□□□□ 0.1
COL6A3P12111 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A3P12111 AL138725.1-201ENST00000407347 1314 ntBASIC15.67■□□□□ 0.1
COL6A3P12111 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
COL6A3P12111 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A3P12111 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
COL6A3P12111 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A3P12111 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
COL6A3P12111 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
COL6A3P12111 RBFOX1-214ENST00000552089 1430 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A3P12111 THAP4-203ENST00000402545 833 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A3P12111 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
COL6A3P12111 BPIFB5P-201ENST00000457066 1099 ntBASIC15.67■□□□□ 0.1
COL6A3P12111 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC15.67■□□□□ 0.1
COL6A3P12111 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A3P12111 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
COL6A3P12111 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.66■□□□□ 0.1
COL6A3P12111 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
COL6A3P12111 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A3P12111 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A3P12111 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A3P12111 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A3P12111 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A3P12111 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.66■□□□□ 0.1
COL6A3P12111 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC15.66■□□□□ 0.1
COL6A3P12111 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC15.66■□□□□ 0.1
COL6A3P12111 AC010976.2-201ENST00000609697 852 ntBASIC15.66■□□□□ 0.1
COL6A3P12111 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
COL6A3P12111 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A3P12111 AC006449.5-201ENST00000610658 2098 ntBASIC15.66■□□□□ 0.1
COL6A3P12111 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A3P12111 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.66■□□□□ 0.1
COL6A3P12111 KRT8P30-201ENST00000432100 650 ntBASIC15.66■□□□□ 0.1
COL6A3P12111 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC15.66■□□□□ 0.1
COL6A3P12111 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC15.66■□□□□ 0.1
COL6A3P12111 RNA5SP417-201ENST00000516459 108 ntBASIC15.66■□□□□ 0.1
COL6A3P12111 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
COL6A3P12111 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC15.66■□□□□ 0.1
COL6A3P12111 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A3P12111 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC15.66■□□□□ 0.1
COL6A3P12111 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.66■□□□□ 0.1
COL6A3P12111 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
COL6A3P12111 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC15.65■□□□□ 0.1
COL6A3P12111 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC15.65■□□□□ 0.1
COL6A3P12111 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC15.65■□□□□ 0.1
COL6A3P12111 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.65■□□□□ 0.1
COL6A3P12111 LY6E-215ENST00000523847 427 ntTSL 3 BASIC15.65■□□□□ 0.1
COL6A3P12111 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC15.65■□□□□ 0.1
COL6A3P12111 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC15.65■□□□□ 0.1
COL6A3P12111 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL6A3P12111 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
COL6A3P12111 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL6A3P12111 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.65■□□□□ 0.1
COL6A3P12111 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
COL6A3P12111 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 GEMIN8P4-201ENST00000380526 729 ntBASIC15.65■□□□□ 0.1
COL6A3P12111 AL121949.1-201ENST00000402043 968 ntBASIC15.65■□□□□ 0.1
COL6A3P12111 AC092570.1-201ENST00000414446 469 ntBASIC15.65■□□□□ 0.1
COL6A3P12111 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC15.65■□□□□ 0.1
COL6A3P12111 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC15.65■□□□□ 0.1
COL6A3P12111 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC15.65■□□□□ 0.1
COL6A3P12111 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC15.65■□□□□ 0.1
COL6A3P12111 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC15.65■□□□□ 0.1
COL6A3P12111 AC068831.5-201ENST00000557387 328 ntBASIC15.65■□□□□ 0.1
COL6A3P12111 AC006116.2-201ENST00000589958 988 ntBASIC15.65■□□□□ 0.1
COL6A3P12111 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
COL6A3P12111 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL6A3P12111 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL6A3P12111 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
COL6A3P12111 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
COL6A3P12111 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL6A3P12111 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms