Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HOXD4P09016 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXD4P09016 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXD4P09016 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXD4P09016 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HOXD4P09016 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 AC098850.1-201ENST00000419919 790 ntBASIC14.14□□□□□ -0.15
HOXD4P09016 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.14□□□□□ -0.15
HOXD4P09016 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HOXD4P09016 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.14□□□□□ -0.15
HOXD4P09016 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.14□□□□□ -0.15
HOXD4P09016 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HOXD4P09016 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.14□□□□□ -0.15
HOXD4P09016 AL512343.1-201ENST00000605837 169 ntBASIC14.14□□□□□ -0.15
HOXD4P09016 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXD4P09016 AL391069.4-201ENST00000609583 481 ntBASIC14.14□□□□□ -0.15
HOXD4P09016 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
HOXD4P09016 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
HOXD4P09016 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.14□□□□□ -0.15
HOXD4P09016 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.14□□□□□ -0.15
HOXD4P09016 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HOXD4P09016 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HOXD4P09016 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HOXD4P09016 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HOXD4P09016 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.14□□□□□ -0.15
HOXD4P09016 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.14□□□□□ -0.15
HOXD4P09016 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
HOXD4P09016 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXD4P09016 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXD4P09016 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.13□□□□□ -0.15
HOXD4P09016 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
HOXD4P09016 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
HOXD4P09016 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
HOXD4P09016 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 MIR648-201ENST00000385046 94 ntBASIC14.13□□□□□ -0.15
HOXD4P09016 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 AC136604.1-201ENST00000418535 575 ntBASIC14.13□□□□□ -0.15
HOXD4P09016 KRT43P-201ENST00000434019 910 ntBASIC14.13□□□□□ -0.15
HOXD4P09016 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.13□□□□□ -0.15
HOXD4P09016 SLED1-202ENST00000512051 380 ntBASIC14.13□□□□□ -0.15
HOXD4P09016 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.13□□□□□ -0.15
HOXD4P09016 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 AP005482.1-201ENST00000563722 1273 ntBASIC14.13□□□□□ -0.15
HOXD4P09016 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 LINC01115-203ENST00000606068 577 ntBASIC14.13□□□□□ -0.15
HOXD4P09016 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXD4P09016 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
HOXD4P09016 KRT8P22-201ENST00000562317 1415 ntBASIC14.13□□□□□ -0.15
HOXD4P09016 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
HOXD4P09016 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXD4P09016 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.13□□□□□ -0.15
HOXD4P09016 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HOXD4P09016 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
HOXD4P09016 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.13□□□□□ -0.15
HOXD4P09016 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.13□□□□□ -0.15
HOXD4P09016 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HOXD4P09016 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms