Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.02□□□□□ -0.16
SPTA1P02549 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 AC134407.2-201ENST00000625089 1978 ntBASIC14.02□□□□□ -0.16
SPTA1P02549 AC004899.1-201ENST00000424687 1714 ntBASIC14.02□□□□□ -0.16
SPTA1P02549 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC14.02□□□□□ -0.16
SPTA1P02549 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPTA1P02549 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
SPTA1P02549 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.02□□□□□ -0.17
SPTA1P02549 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.02□□□□□ -0.17
SPTA1P02549 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
SPTA1P02549 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC14.02□□□□□ -0.17
SPTA1P02549 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
SPTA1P02549 AC026316.1-201ENST00000398900 414 ntBASIC14.02□□□□□ -0.17
SPTA1P02549 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
SPTA1P02549 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 AL133466.1-201ENST00000447582 150 ntBASIC14.02□□□□□ -0.17
SPTA1P02549 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC14.02□□□□□ -0.17
SPTA1P02549 AP001582.1-201ENST00000525856 295 ntBASIC14.02□□□□□ -0.17
SPTA1P02549 NEU3-205ENST00000531619 582 ntTSL 5 BASIC14.02□□□□□ -0.17
SPTA1P02549 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.17
SPTA1P02549 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.02□□□□□ -0.17
SPTA1P02549 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.02□□□□□ -0.17
SPTA1P02549 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.02□□□□□ -0.17
SPTA1P02549 AC060834.1-201ENST00000443027 2032 ntBASIC14.02□□□□□ -0.17
SPTA1P02549 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC14.02□□□□□ -0.17
SPTA1P02549 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC14.02□□□□□ -0.17
SPTA1P02549 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPTA1P02549 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.01□□□□□ -0.17
SPTA1P02549 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.01□□□□□ -0.17
SPTA1P02549 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
SPTA1P02549 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 CTBP2P4-201ENST00000513884 920 ntBASIC14.01□□□□□ -0.17
SPTA1P02549 DNM1P30-201ENST00000563586 452 ntBASIC14.01□□□□□ -0.17
SPTA1P02549 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.01□□□□□ -0.17
SPTA1P02549 AC244157.2-201ENST00000616239 1006 ntBASIC14.01□□□□□ -0.17
SPTA1P02549 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.01□□□□□ -0.17
SPTA1P02549 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.01□□□□□ -0.17
SPTA1P02549 AC006453.1-201ENST00000636037 1257 ntBASIC14.01□□□□□ -0.17
SPTA1P02549 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
SPTA1P02549 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SPTA1P02549 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC14.01□□□□□ -0.17
SPTA1P02549 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SPTA1P02549 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC14.01□□□□□ -0.17
SPTA1P02549 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 DNAJB1P1-201ENST00000429417 1024 ntBASIC14.01□□□□□ -0.17
SPTA1P02549 AL353637.1-201ENST00000451571 732 ntBASIC14.01□□□□□ -0.17
SPTA1P02549 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 RNF146-211ENST00000609447 607 ntTSL 4 BASIC14.01□□□□□ -0.17
SPTA1P02549 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 AC004923.1-202ENST00000642106 209 ntBASIC14.01□□□□□ -0.17
SPTA1P02549 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SPTA1P02549 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SPTA1P02549 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14□□□□□ -0.17
SPTA1P02549 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SPTA1P02549 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC14□□□□□ -0.17
SPTA1P02549 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
SPTA1P02549 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC14□□□□□ -0.17
SPTA1P02549 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
SPTA1P02549 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
SPTA1P02549 PRAL-201ENST00000624952 3286 ntBASIC14□□□□□ -0.17
SPTA1P02549 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SPTA1P02549 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SPTA1P02549 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SPTA1P02549 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SPTA1P02549 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SPTA1P02549 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
SPTA1P02549 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14□□□□□ -0.17
SPTA1P02549 AC067930.6-201ENST00000623257 4947 ntBASIC14□□□□□ -0.17
SPTA1P02549 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SPTA1P02549 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14□□□□□ -0.17
SPTA1P02549 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC14□□□□□ -0.17
SPTA1P02549 HNRNPA1P63-201ENST00000427917 963 ntBASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms