Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 RPF1-202ENST00000370656 724 ntTSL 2 BASIC19.17■□□□□ 0.66
CACNA1FO60840 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CACNA1FO60840 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.17■□□□□ 0.66
CACNA1FO60840 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 AL358472.3-201ENST00000608147 415 ntBASIC19.17■□□□□ 0.66
CACNA1FO60840 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.17■□□□□ 0.66
CACNA1FO60840 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
CACNA1FO60840 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.17■□□□□ 0.66
CACNA1FO60840 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
CACNA1FO60840 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CACNA1FO60840 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.17■□□□□ 0.66
CACNA1FO60840 TISP43-201ENST00000409793 538 ntTSL 4 BASIC19.17■□□□□ 0.66
CACNA1FO60840 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CACNA1FO60840 AC008687.7-202ENST00000637404 953 ntBASIC19.17■□□□□ 0.66
CACNA1FO60840 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC19.17■□□□□ 0.66
CACNA1FO60840 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CACNA1FO60840 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC19.17■□□□□ 0.66
CACNA1FO60840 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CACNA1FO60840 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC19.16■□□□□ 0.66
CACNA1FO60840 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.16■□□□□ 0.66
CACNA1FO60840 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
CACNA1FO60840 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC19.16■□□□□ 0.66
CACNA1FO60840 HOMER2P2-201ENST00000451621 847 ntBASIC19.16■□□□□ 0.66
CACNA1FO60840 MIR4783-201ENST00000580343 82 ntBASIC19.16■□□□□ 0.66
CACNA1FO60840 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
CACNA1FO60840 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.16■□□□□ 0.66
CACNA1FO60840 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC19.16■□□□□ 0.66
CACNA1FO60840 HARS-202ENST00000415192 1401 ntTSL 2 BASIC19.16■□□□□ 0.66
CACNA1FO60840 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19.16■□□□□ 0.66
CACNA1FO60840 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.16■□□□□ 0.66
CACNA1FO60840 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CACNA1FO60840 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CACNA1FO60840 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CACNA1FO60840 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1FO60840 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1FO60840 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC19.15■□□□□ 0.66
CACNA1FO60840 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1FO60840 RNA5SP486-201ENST00000515961 83 ntBASIC19.15■□□□□ 0.66
CACNA1FO60840 NCK2-206ENST00000522586 490 ntTSL 5 BASIC19.15■□□□□ 0.66
CACNA1FO60840 VPS18-202ENST00000558474 873 ntTSL 3 BASIC19.15■□□□□ 0.66
CACNA1FO60840 AC138696.2-201ENST00000607376 223 ntBASIC19.15■□□□□ 0.66
CACNA1FO60840 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC19.15■□□□□ 0.66
CACNA1FO60840 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CACNA1FO60840 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CACNA1FO60840 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1FO60840 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1FO60840 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CACNA1FO60840 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1FO60840 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1FO60840 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
CACNA1FO60840 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC19.15■□□□□ 0.66
CACNA1FO60840 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1FO60840 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1FO60840 FAM197Y7-201ENST00000432892 766 ntBASIC19.15■□□□□ 0.66
CACNA1FO60840 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC19.15■□□□□ 0.66
CACNA1FO60840 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC19.15■□□□□ 0.66
CACNA1FO60840 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC19.15■□□□□ 0.66
CACNA1FO60840 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CACNA1FO60840 GSN-215ENST00000545652 2428 ntTSL 2 BASIC19.15■□□□□ 0.66
CACNA1FO60840 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1FO60840 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CACNA1FO60840 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CACNA1FO60840 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CACNA1FO60840 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
CACNA1FO60840 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CACNA1FO60840 INE2-201ENST00000630399 1874 ntBASIC19.14■□□□□ 0.66
CACNA1FO60840 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC19.14■□□□□ 0.66
CACNA1FO60840 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms