Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC142086.6-201ENST00000621154 1765 ntBASIC22.45■■□□□ 1.19
PCDHGA1Q9Y5H4 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 RBM38-205ENST00000440234 686 ntTSL 2 BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 AP001330.3-201ENST00000520123 633 ntBASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA1Q9Y5H4 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PCDHGA1Q9Y5H4 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC22.44■■□□□ 1.18
PCDHGA1Q9Y5H4 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.44■■□□□ 1.18
PCDHGA1Q9Y5H4 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC22.44■■□□□ 1.18
PCDHGA1Q9Y5H4 AC005703.6-201ENST00000623265 1329 ntBASIC22.44■■□□□ 1.18
PCDHGA1Q9Y5H4 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.44■■□□□ 1.18
PCDHGA1Q9Y5H4 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC22.43■■□□□ 1.18
PCDHGA1Q9Y5H4 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHGA1Q9Y5H4 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC22.43■■□□□ 1.18
PCDHGA1Q9Y5H4 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHGA1Q9Y5H4 AC097381.1-201ENST00000429019 1296 ntBASIC22.43■■□□□ 1.18
PCDHGA1Q9Y5H4 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.43■■□□□ 1.18
PCDHGA1Q9Y5H4 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHGA1Q9Y5H4 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHGA1Q9Y5H4 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHGA1Q9Y5H4 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDHGA1Q9Y5H4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.42■■□□□ 1.18
PCDHGA1Q9Y5H4 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC22.42■■□□□ 1.18
PCDHGA1Q9Y5H4 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.42■■□□□ 1.18
PCDHGA1Q9Y5H4 ANKRD20A6P-201ENST00000618763 204 ntBASIC22.42■■□□□ 1.18
PCDHGA1Q9Y5H4 SYT6-210ENST00000641643 1587 ntBASIC22.42■■□□□ 1.18
PCDHGA1Q9Y5H4 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
PCDHGA1Q9Y5H4 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHGA1Q9Y5H4 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDHGA1Q9Y5H4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.41■■□□□ 1.18
PCDHGA1Q9Y5H4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.41■■□□□ 1.18
PCDHGA1Q9Y5H4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
PCDHGA1Q9Y5H4 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.4■■□□□ 1.18
PCDHGA1Q9Y5H4 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
PCDHGA1Q9Y5H4 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA1Q9Y5H4 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA1Q9Y5H4 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA1Q9Y5H4 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA1Q9Y5H4 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA1Q9Y5H4 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PCDHGA1Q9Y5H4 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
PCDHGA1Q9Y5H4 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
PCDHGA1Q9Y5H4 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC22.39■■□□□ 1.18
PCDHGA1Q9Y5H4 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHGA1Q9Y5H4 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHGA1Q9Y5H4 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHGA1Q9Y5H4 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
PCDHGA1Q9Y5H4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHGA1Q9Y5H4 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHGA1Q9Y5H4 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHGA1Q9Y5H4 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
PCDHGA1Q9Y5H4 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC22.38■■□□□ 1.17
PCDHGA1Q9Y5H4 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
PCDHGA1Q9Y5H4 RASA4CP-201ENST00000424092 1398 ntBASIC22.38■■□□□ 1.17
PCDHGA1Q9Y5H4 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.37■■□□□ 1.17
PCDHGA1Q9Y5H4 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC22.37■■□□□ 1.17
PCDHGA1Q9Y5H4 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHGA1Q9Y5H4 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHGA1Q9Y5H4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
PCDHGA1Q9Y5H4 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
PCDHGA1Q9Y5H4 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PCDHGA1Q9Y5H4 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC22.36■■□□□ 1.17
PCDHGA1Q9Y5H4 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC22.36■■□□□ 1.17
PCDHGA1Q9Y5H4 MIR4767-201ENST00000582827 78 ntBASIC22.36■■□□□ 1.17
PCDHGA1Q9Y5H4 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHGA1Q9Y5H4 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
PCDHGA1Q9Y5H4 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHGA1Q9Y5H4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
PCDHGA1Q9Y5H4 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PCDHGA1Q9Y5H4 AC097639.1-201ENST00000565519 1891 ntBASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 GLI3-203ENST00000437480 451 ntTSL 2 BASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 AL138724.1-201ENST00000606771 1088 ntBASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 CA15P2-201ENST00000611168 834 ntBASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PCDHGA1Q9Y5H4 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC22.33■■□□□ 1.17
PCDHGA1Q9Y5H4 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHGA1Q9Y5H4 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
PCDHGA1Q9Y5H4 STOX2-205ENST00000513034 807 ntTSL 3 BASIC22.33■■□□□ 1.17
PCDHGA1Q9Y5H4 PLD4-205ENST00000553861 667 ntTSL 2 BASIC22.33■■□□□ 1.17
PCDHGA1Q9Y5H4 AC027682.1-201ENST00000562846 899 ntBASIC22.33■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms