Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VRK1Q99986 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VRK1Q99986 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
VRK1Q99986 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
VRK1Q99986 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VRK1Q99986 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
VRK1Q99986 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VRK1Q99986 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VRK1Q99986 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.29■□□□□ 0.84
VRK1Q99986 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
VRK1Q99986 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VRK1Q99986 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VRK1Q99986 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VRK1Q99986 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VRK1Q99986 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VRK1Q99986 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
VRK1Q99986 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
VRK1Q99986 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.29■□□□□ 0.84
VRK1Q99986 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
VRK1Q99986 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
VRK1Q99986 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.28■□□□□ 0.84
VRK1Q99986 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
VRK1Q99986 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VRK1Q99986 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VRK1Q99986 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.28■□□□□ 0.84
VRK1Q99986 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.28■□□□□ 0.84
VRK1Q99986 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VRK1Q99986 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VRK1Q99986 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VRK1Q99986 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VRK1Q99986 AC239859.2-201ENST00000444165 318 ntBASIC20.27■□□□□ 0.84
VRK1Q99986 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.27■□□□□ 0.84
VRK1Q99986 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VRK1Q99986 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VRK1Q99986 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VRK1Q99986 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VRK1Q99986 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
VRK1Q99986 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VRK1Q99986 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VRK1Q99986 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
VRK1Q99986 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
VRK1Q99986 AC142381.3-201ENST00000568208 1670 ntBASIC20.26■□□□□ 0.83
VRK1Q99986 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.26■□□□□ 0.83
VRK1Q99986 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
VRK1Q99986 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
VRK1Q99986 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.26■□□□□ 0.83
VRK1Q99986 THA1P-201ENST00000590384 1145 ntBASIC20.26■□□□□ 0.83
VRK1Q99986 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VRK1Q99986 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.26■□□□□ 0.83
VRK1Q99986 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VRK1Q99986 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VRK1Q99986 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VRK1Q99986 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.25■□□□□ 0.83
VRK1Q99986 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VRK1Q99986 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VRK1Q99986 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.25■□□□□ 0.83
VRK1Q99986 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.25■□□□□ 0.83
VRK1Q99986 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VRK1Q99986 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VRK1Q99986 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VRK1Q99986 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.24■□□□□ 0.83
VRK1Q99986 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.23■□□□□ 0.83
VRK1Q99986 GUSBP5-201ENST00000418136 578 ntBASIC20.23■□□□□ 0.83
VRK1Q99986 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.23■□□□□ 0.83
VRK1Q99986 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VRK1Q99986 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.23■□□□□ 0.83
VRK1Q99986 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.23■□□□□ 0.83
VRK1Q99986 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.23■□□□□ 0.83
VRK1Q99986 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VRK1Q99986 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VRK1Q99986 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VRK1Q99986 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VRK1Q99986 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VRK1Q99986 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VRK1Q99986 KRT18P24-201ENST00000344739 1156 ntBASIC20.22■□□□□ 0.83
VRK1Q99986 KRT125P-201ENST00000546827 989 ntBASIC20.22■□□□□ 0.83
VRK1Q99986 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.22■□□□□ 0.83
VRK1Q99986 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.22■□□□□ 0.83
VRK1Q99986 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VRK1Q99986 AL139125.2-201ENST00000623134 1869 ntBASIC20.22■□□□□ 0.83
VRK1Q99986 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK1Q99986 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK1Q99986 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.21■□□□□ 0.83
VRK1Q99986 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK1Q99986 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
VRK1Q99986 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK1Q99986 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
VRK1Q99986 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.21■□□□□ 0.83
VRK1Q99986 AL592295.1-201ENST00000400984 884 ntBASIC20.21■□□□□ 0.83
VRK1Q99986 BX664725.1-201ENST00000438252 379 ntBASIC20.21■□□□□ 0.83
VRK1Q99986 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK1Q99986 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VRK1Q99986 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.21■□□□□ 0.83
VRK1Q99986 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
VRK1Q99986 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VRK1Q99986 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VRK1Q99986 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.2■□□□□ 0.82
VRK1Q99986 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VRK1Q99986 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VRK1Q99986 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms