Protein–RNA interactions for Protein: Q93008

USP9X, Probable ubiquitin carboxyl-terminal hydrolase FAF-X, humanhuman

Predicted RBP Predictions only

Length 2,570 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP9XQ93008 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.61■□□□□ 0.89
USP9XQ93008 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP9XQ93008 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.61■□□□□ 0.89
USP9XQ93008 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP9XQ93008 YBX1P1-201ENST00000445822 960 ntBASIC20.61■□□□□ 0.89
USP9XQ93008 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP9XQ93008 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.61■□□□□ 0.89
USP9XQ93008 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
USP9XQ93008 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP9XQ93008 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.6■□□□□ 0.89
USP9XQ93008 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP9XQ93008 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP9XQ93008 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP9XQ93008 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.59■□□□□ 0.89
USP9XQ93008 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.59■□□□□ 0.89
USP9XQ93008 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
USP9XQ93008 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
USP9XQ93008 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP9XQ93008 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP9XQ93008 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.59■□□□□ 0.89
USP9XQ93008 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP9XQ93008 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP9XQ93008 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP9XQ93008 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP9XQ93008 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.58■□□□□ 0.89
USP9XQ93008 LINC01003-201ENST00000564834 1764 ntBASIC20.58■□□□□ 0.89
USP9XQ93008 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
USP9XQ93008 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
USP9XQ93008 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP9XQ93008 HLA-L-209ENST00000420110 1011 ntBASIC20.58■□□□□ 0.88
USP9XQ93008 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.58■□□□□ 0.88
USP9XQ93008 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.57■□□□□ 0.88
USP9XQ93008 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP9XQ93008 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.57■□□□□ 0.88
USP9XQ93008 RAP2CP1-201ENST00000605103 478 ntBASIC20.57■□□□□ 0.88
USP9XQ93008 AC005703.6-201ENST00000623265 1329 ntBASIC20.57■□□□□ 0.88
USP9XQ93008 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP9XQ93008 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP9XQ93008 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.56■□□□□ 0.88
USP9XQ93008 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.56■□□□□ 0.88
USP9XQ93008 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP9XQ93008 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP9XQ93008 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.55■□□□□ 0.88
USP9XQ93008 AC233992.3-201ENST00000607491 485 ntBASIC20.55■□□□□ 0.88
USP9XQ93008 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.55■□□□□ 0.88
USP9XQ93008 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.55■□□□□ 0.88
USP9XQ93008 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.55■□□□□ 0.88
USP9XQ93008 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
USP9XQ93008 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP9XQ93008 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP9XQ93008 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.55■□□□□ 0.88
USP9XQ93008 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP9XQ93008 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP9XQ93008 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP9XQ93008 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP9XQ93008 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP9XQ93008 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP9XQ93008 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
USP9XQ93008 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
USP9XQ93008 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP9XQ93008 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.53■□□□□ 0.88
USP9XQ93008 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.53■□□□□ 0.88
USP9XQ93008 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.53■□□□□ 0.88
USP9XQ93008 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP9XQ93008 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP9XQ93008 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP9XQ93008 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
USP9XQ93008 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.53■□□□□ 0.88
USP9XQ93008 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
USP9XQ93008 AC004911.1-201ENST00000416316 871 ntBASIC20.53■□□□□ 0.88
USP9XQ93008 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.53■□□□□ 0.88
USP9XQ93008 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP9XQ93008 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP9XQ93008 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.53■□□□□ 0.88
USP9XQ93008 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.52■□□□□ 0.88
USP9XQ93008 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.52■□□□□ 0.88
USP9XQ93008 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
USP9XQ93008 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.52■□□□□ 0.88
USP9XQ93008 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.52■□□□□ 0.88
USP9XQ93008 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP9XQ93008 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP9XQ93008 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.52■□□□□ 0.88
USP9XQ93008 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.52■□□□□ 0.88
USP9XQ93008 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP9XQ93008 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.51■□□□□ 0.87
USP9XQ93008 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP9XQ93008 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP9XQ93008 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP9XQ93008 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.51■□□□□ 0.87
USP9XQ93008 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP9XQ93008 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP9XQ93008 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP9XQ93008 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.51■□□□□ 0.87
USP9XQ93008 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP9XQ93008 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
USP9XQ93008 AC123595.1-201ENST00000440769 1046 ntBASIC20.5■□□□□ 0.87
USP9XQ93008 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.5■□□□□ 0.87
USP9XQ93008 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP9XQ93008 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP9XQ93008 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms