Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28AQ8IWP9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28AQ8IWP9 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC28AQ8IWP9 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28AQ8IWP9 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28AQ8IWP9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC28AQ8IWP9 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC28AQ8IWP9 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC28AQ8IWP9 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC28AQ8IWP9 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28AQ8IWP9 AL391121.1-201ENST00000607967 1349 ntBASIC19.28■□□□□ 0.68
CCDC28AQ8IWP9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28AQ8IWP9 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CCDC28AQ8IWP9 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CCDC28AQ8IWP9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC28AQ8IWP9 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CCDC28AQ8IWP9 AC018358.1-201ENST00000631079 1402 ntBASIC19.27■□□□□ 0.68
CCDC28AQ8IWP9 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CCDC28AQ8IWP9 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CCDC28AQ8IWP9 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CCDC28AQ8IWP9 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28AQ8IWP9 AC010501.1-201ENST00000606270 1962 ntBASIC19.27■□□□□ 0.68
CCDC28AQ8IWP9 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28AQ8IWP9 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28AQ8IWP9 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC28AQ8IWP9 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC28AQ8IWP9 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC28AQ8IWP9 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC28AQ8IWP9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC28AQ8IWP9 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 AC136428.2-201ENST00000563187 214 ntBASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC28AQ8IWP9 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28AQ8IWP9 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC28AQ8IWP9 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28AQ8IWP9 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC28AQ8IWP9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28AQ8IWP9 AP004609.3-201ENST00000610705 1884 ntBASIC19.25■□□□□ 0.67
CCDC28AQ8IWP9 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28AQ8IWP9 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC28AQ8IWP9 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28AQ8IWP9 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC28AQ8IWP9 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC28AQ8IWP9 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CCDC28AQ8IWP9 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28AQ8IWP9 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CCDC28AQ8IWP9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.24■□□□□ 0.67
CCDC28AQ8IWP9 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28AQ8IWP9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28AQ8IWP9 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCDC28AQ8IWP9 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28AQ8IWP9 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC28AQ8IWP9 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28AQ8IWP9 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC28AQ8IWP9 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28AQ8IWP9 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28AQ8IWP9 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28AQ8IWP9 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28AQ8IWP9 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28AQ8IWP9 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC28AQ8IWP9 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CCDC28AQ8IWP9 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC28AQ8IWP9 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms