Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC16.39■□□□□ 0.21
CSMD3Q7Z407 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CSMD3Q7Z407 SRD5A1P1-201ENST00000442297 786 ntBASIC16.39■□□□□ 0.21
CSMD3Q7Z407 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CSMD3Q7Z407 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC16.38■□□□□ 0.21
CSMD3Q7Z407 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CSMD3Q7Z407 MIR4767-201ENST00000582827 78 ntBASIC16.38■□□□□ 0.21
CSMD3Q7Z407 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC16.38■□□□□ 0.21
CSMD3Q7Z407 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC16.38■□□□□ 0.21
CSMD3Q7Z407 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC16.38■□□□□ 0.21
CSMD3Q7Z407 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CSMD3Q7Z407 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSMD3Q7Z407 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSMD3Q7Z407 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSMD3Q7Z407 AC027682.1-201ENST00000562846 899 ntBASIC16.37■□□□□ 0.21
CSMD3Q7Z407 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSMD3Q7Z407 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSMD3Q7Z407 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSMD3Q7Z407 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC16.37■□□□□ 0.21
CSMD3Q7Z407 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CSMD3Q7Z407 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CSMD3Q7Z407 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 JTB-203ENST00000368589 1216 ntTSL 2 BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CSMD3Q7Z407 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CSMD3Q7Z407 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 SERBP1P1-201ENST00000396021 1160 ntBASIC16.34■□□□□ 0.21
CSMD3Q7Z407 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 AC096887.2-201ENST00000623443 1957 ntBASIC16.34■□□□□ 0.21
CSMD3Q7Z407 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 ESRRAP2-201ENST00000418437 1549 ntBASIC16.34■□□□□ 0.21
CSMD3Q7Z407 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CSMD3Q7Z407 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CSMD3Q7Z407 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CSMD3Q7Z407 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CSMD3Q7Z407 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
CSMD3Q7Z407 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSMD3Q7Z407 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSMD3Q7Z407 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC16.33■□□□□ 0.2
CSMD3Q7Z407 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSMD3Q7Z407 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC16.33■□□□□ 0.2
CSMD3Q7Z407 AC142472.1-201ENST00000612013 1741 ntBASIC16.33■□□□□ 0.2
CSMD3Q7Z407 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSMD3Q7Z407 RAP2CP1-201ENST00000605103 478 ntBASIC16.33■□□□□ 0.2
CSMD3Q7Z407 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSMD3Q7Z407 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC16.33■□□□□ 0.2
CSMD3Q7Z407 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CSMD3Q7Z407 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CSMD3Q7Z407 KRT18P5-201ENST00000436075 1291 ntBASIC16.32■□□□□ 0.2
CSMD3Q7Z407 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC16.32■□□□□ 0.2
CSMD3Q7Z407 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC16.32■□□□□ 0.2
CSMD3Q7Z407 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC16.32■□□□□ 0.2
CSMD3Q7Z407 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC16.32■□□□□ 0.2
CSMD3Q7Z407 ID1-201ENST00000376105 1233 ntBASIC16.32■□□□□ 0.2
CSMD3Q7Z407 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CSMD3Q7Z407 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CSMD3Q7Z407 AC090877.2-201ENST00000558441 1738 ntBASIC16.32■□□□□ 0.2
CSMD3Q7Z407 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CSMD3Q7Z407 C17orf82-201ENST00000623772 1530 ntBASIC16.31■□□□□ 0.2
CSMD3Q7Z407 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CSMD3Q7Z407 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CSMD3Q7Z407 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC16.31■□□□□ 0.2
CSMD3Q7Z407 SLC47A1P1-202ENST00000449666 945 ntBASIC16.31■□□□□ 0.2
CSMD3Q7Z407 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC16.31■□□□□ 0.2
CSMD3Q7Z407 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC16.31■□□□□ 0.2
CSMD3Q7Z407 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CSMD3Q7Z407 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CSMD3Q7Z407 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC16.3■□□□□ 0.2
CSMD3Q7Z407 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CSMD3Q7Z407 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms