Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC32.72■■■□□ 2.83
MSH6P52701 LINC01003-201ENST00000564834 1764 ntBASIC32.72■■■□□ 2.83
MSH6P52701 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC32.71■■■□□ 2.83
MSH6P52701 PTCHD3P2-201ENST00000424937 1205 ntBASIC32.71■■■□□ 2.83
MSH6P52701 AC011298.3-201ENST00000615796 283 ntBASIC32.71■■■□□ 2.83
MSH6P52701 AC090877.2-201ENST00000558441 1738 ntBASIC32.71■■■□□ 2.83
MSH6P52701 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC32.71■■■□□ 2.83
MSH6P52701 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC32.7■■■□□ 2.83
MSH6P52701 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC32.7■■■□□ 2.83
MSH6P52701 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC32.7■■■□□ 2.83
MSH6P52701 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC32.7■■■□□ 2.83
MSH6P52701 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC32.7■■■□□ 2.82
MSH6P52701 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC32.7■■■□□ 2.82
MSH6P52701 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC32.7■■■□□ 2.82
MSH6P52701 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC32.69■■■□□ 2.82
MSH6P52701 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC32.69■■■□□ 2.82
MSH6P52701 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
MSH6P52701 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC32.69■■■□□ 2.82
MSH6P52701 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC32.69■■■□□ 2.82
MSH6P52701 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC32.68■■■□□ 2.82
MSH6P52701 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC32.68■■■□□ 2.82
MSH6P52701 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC32.68■■■□□ 2.82
MSH6P52701 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC32.68■■■□□ 2.82
MSH6P52701 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC32.68■■■□□ 2.82
MSH6P52701 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC32.68■■■□□ 2.82
MSH6P52701 AC092437.1-201ENST00000624794 1048 ntBASIC32.68■■■□□ 2.82
MSH6P52701 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
MSH6P52701 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC32.67■■■□□ 2.82
MSH6P52701 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC32.67■■■□□ 2.82
MSH6P52701 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC32.67■■■□□ 2.82
MSH6P52701 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC32.67■■■□□ 2.82
MSH6P52701 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC32.67■■■□□ 2.82
MSH6P52701 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC32.67■■■□□ 2.82
MSH6P52701 KRT18P5-201ENST00000436075 1291 ntBASIC32.67■■■□□ 2.82
MSH6P52701 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC32.67■■■□□ 2.82
MSH6P52701 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
MSH6P52701 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC32.66■■■□□ 2.82
MSH6P52701 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC32.66■■■□□ 2.82
MSH6P52701 AL138724.1-201ENST00000606771 1088 ntBASIC32.66■■■□□ 2.82
MSH6P52701 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
MSH6P52701 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC32.66■■■□□ 2.82
MSH6P52701 HACD1-201ENST00000326961 773 ntTSL 2 BASIC32.65■■■□□ 2.82
MSH6P52701 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
MSH6P52701 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
MSH6P52701 AC005703.6-201ENST00000623265 1329 ntBASIC32.65■■■□□ 2.82
MSH6P52701 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
MSH6P52701 AK1-201ENST00000223836 736 ntTSL 3 BASIC32.64■■■□□ 2.82
MSH6P52701 SLC47A1P1-202ENST00000449666 945 ntBASIC32.64■■■□□ 2.82
MSH6P52701 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC32.64■■■□□ 2.82
MSH6P52701 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
MSH6P52701 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
MSH6P52701 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
MSH6P52701 ID1-201ENST00000376105 1233 ntBASIC32.63■■■□□ 2.81
MSH6P52701 DENND3-207ENST00000518347 850 ntTSL 2 BASIC32.63■■■□□ 2.81
MSH6P52701 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC32.63■■■□□ 2.81
MSH6P52701 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC32.62■■■□□ 2.81
MSH6P52701 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC32.62■■■□□ 2.81
MSH6P52701 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC32.62■■■□□ 2.81
MSH6P52701 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC32.62■■■□□ 2.81
MSH6P52701 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC32.62■■■□□ 2.81
MSH6P52701 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC32.62■■■□□ 2.81
MSH6P52701 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
MSH6P52701 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC32.61■■■□□ 2.81
MSH6P52701 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
MSH6P52701 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
MSH6P52701 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
MSH6P52701 AP004609.3-201ENST00000610705 1884 ntBASIC32.61■■■□□ 2.81
MSH6P52701 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
MSH6P52701 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC32.61■■■□□ 2.81
MSH6P52701 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC32.61■■■□□ 2.81
MSH6P52701 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC32.61■■■□□ 2.81
MSH6P52701 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC32.61■■■□□ 2.81
MSH6P52701 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
MSH6P52701 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC32.6■■■□□ 2.81
MSH6P52701 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC32.6■■■□□ 2.81
MSH6P52701 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC32.6■■■□□ 2.81
MSH6P52701 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
MSH6P52701 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
MSH6P52701 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
MSH6P52701 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
MSH6P52701 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
MSH6P52701 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC32.59■■■□□ 2.81
MSH6P52701 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC32.59■■■□□ 2.81
MSH6P52701 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
MSH6P52701 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
MSH6P52701 AC099791.2-201ENST00000605725 427 ntBASIC32.58■■■□□ 2.81
MSH6P52701 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC32.58■■■□□ 2.81
MSH6P52701 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
MSH6P52701 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
MSH6P52701 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC32.57■■■□□ 2.8
MSH6P52701 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
MSH6P52701 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC32.56■■■□□ 2.8
MSH6P52701 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC32.56■■■□□ 2.8
MSH6P52701 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
MSH6P52701 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC32.56■■■□□ 2.8
MSH6P52701 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC32.55■■■□□ 2.8
MSH6P52701 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC32.55■■■□□ 2.8
MSH6P52701 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
MSH6P52701 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
MSH6P52701 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC32.55■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms