Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PDLIM4P50479 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.69■□□□□ 0.74
PDLIM4P50479 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.69■□□□□ 0.74
PDLIM4P50479 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PDLIM4P50479 AC093323.1-202ENST00000635031 2045 ntBASIC19.68■□□□□ 0.74
PDLIM4P50479 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.68■□□□□ 0.74
PDLIM4P50479 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PDLIM4P50479 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PDLIM4P50479 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.68■□□□□ 0.74
PDLIM4P50479 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.68■□□□□ 0.74
PDLIM4P50479 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.68■□□□□ 0.74
PDLIM4P50479 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.68■□□□□ 0.74
PDLIM4P50479 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
PDLIM4P50479 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
PDLIM4P50479 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PDLIM4P50479 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PDLIM4P50479 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PDLIM4P50479 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.67■□□□□ 0.74
PDLIM4P50479 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PDLIM4P50479 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.66■□□□□ 0.74
PDLIM4P50479 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM4P50479 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM4P50479 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM4P50479 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM4P50479 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.66■□□□□ 0.74
PDLIM4P50479 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM4P50479 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.66■□□□□ 0.74
PDLIM4P50479 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.66■□□□□ 0.74
PDLIM4P50479 AL139246.5-201ENST00000606645 996 ntBASIC19.66■□□□□ 0.74
PDLIM4P50479 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
PDLIM4P50479 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM4P50479 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.66■□□□□ 0.74
PDLIM4P50479 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM4P50479 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM4P50479 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM4P50479 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.65■□□□□ 0.74
PDLIM4P50479 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.65■□□□□ 0.74
PDLIM4P50479 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM4P50479 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
PDLIM4P50479 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.64■□□□□ 0.74
PDLIM4P50479 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM4P50479 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM4P50479 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM4P50479 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
PDLIM4P50479 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.64■□□□□ 0.73
PDLIM4P50479 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM4P50479 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM4P50479 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.64■□□□□ 0.73
PDLIM4P50479 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.64■□□□□ 0.73
PDLIM4P50479 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM4P50479 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM4P50479 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM4P50479 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM4P50479 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.63■□□□□ 0.73
PDLIM4P50479 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
PDLIM4P50479 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.63■□□□□ 0.73
PDLIM4P50479 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM4P50479 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.63■□□□□ 0.73
PDLIM4P50479 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.63■□□□□ 0.73
PDLIM4P50479 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
PDLIM4P50479 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.63■□□□□ 0.73
PDLIM4P50479 AC096887.2-201ENST00000623443 1957 ntBASIC19.63■□□□□ 0.73
PDLIM4P50479 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
PDLIM4P50479 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PDLIM4P50479 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PDLIM4P50479 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PDLIM4P50479 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.62■□□□□ 0.73
PDLIM4P50479 ERN1-208ENST00000606895 2068 ntBASIC19.62■□□□□ 0.73
PDLIM4P50479 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM4P50479 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.61■□□□□ 0.73
PDLIM4P50479 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM4P50479 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM4P50479 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM4P50479 MIR638-201ENST00000385237 100 ntBASIC19.61■□□□□ 0.73
PDLIM4P50479 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
PDLIM4P50479 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM4P50479 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM4P50479 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM4P50479 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM4P50479 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
PDLIM4P50479 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
PDLIM4P50479 AC010501.1-201ENST00000606270 1962 ntBASIC19.61■□□□□ 0.73
PDLIM4P50479 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.61■□□□□ 0.73
PDLIM4P50479 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.61■□□□□ 0.73
PDLIM4P50479 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PDLIM4P50479 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
PDLIM4P50479 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PDLIM4P50479 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PDLIM4P50479 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.6■□□□□ 0.73
PDLIM4P50479 SNX5-217ENST00000606557 1087 ntBASIC19.6■□□□□ 0.73
PDLIM4P50479 MIR6722-201ENST00000617286 78 ntBASIC19.6■□□□□ 0.73
PDLIM4P50479 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.6■□□□□ 0.73
PDLIM4P50479 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.6■□□□□ 0.73
PDLIM4P50479 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PDLIM4P50479 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.59■□□□□ 0.73
PDLIM4P50479 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.59■□□□□ 0.73
PDLIM4P50479 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.59■□□□□ 0.73
PDLIM4P50479 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.59■□□□□ 0.73
PDLIM4P50479 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PDLIM4P50479 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms