Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
RFX3P48380 KRT8P33-201ENST00000508125 1423 ntBASIC21.67■■□□□ 1.06
RFX3P48380 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RFX3P48380 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RFX3P48380 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RFX3P48380 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RFX3P48380 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
RFX3P48380 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RFX3P48380 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RFX3P48380 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RFX3P48380 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RFX3P48380 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.66■■□□□ 1.06
RFX3P48380 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RFX3P48380 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
RFX3P48380 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.66■■□□□ 1.06
RFX3P48380 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.66■■□□□ 1.06
RFX3P48380 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RFX3P48380 PVT1_1.1-201ENST00000615125 194 ntBASIC21.66■■□□□ 1.06
RFX3P48380 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.66■■□□□ 1.06
RFX3P48380 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.66■■□□□ 1.06
RFX3P48380 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RFX3P48380 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.66■■□□□ 1.06
RFX3P48380 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RFX3P48380 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RFX3P48380 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RFX3P48380 AC074183.2-201ENST00000623112 922 ntBASIC21.65■■□□□ 1.06
RFX3P48380 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RFX3P48380 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RFX3P48380 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.64■■□□□ 1.06
RFX3P48380 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
RFX3P48380 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
RFX3P48380 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
RFX3P48380 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RFX3P48380 AL139125.2-201ENST00000623134 1869 ntBASIC21.64■■□□□ 1.05
RFX3P48380 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
RFX3P48380 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RFX3P48380 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX3P48380 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RFX3P48380 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RFX3P48380 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.63■■□□□ 1.05
RFX3P48380 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.63■■□□□ 1.05
RFX3P48380 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RFX3P48380 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.63■■□□□ 1.05
RFX3P48380 LINC01124-201ENST00000409786 2117 ntBASIC21.63■■□□□ 1.05
RFX3P48380 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.63■■□□□ 1.05
RFX3P48380 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
RFX3P48380 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.63■■□□□ 1.05
RFX3P48380 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.63■■□□□ 1.05
RFX3P48380 MIR6089-201ENST00000616698 64 ntBASIC21.63■■□□□ 1.05
RFX3P48380 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX3P48380 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RFX3P48380 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX3P48380 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RFX3P48380 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RFX3P48380 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
RFX3P48380 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RFX3P48380 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.62■■□□□ 1.05
RFX3P48380 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.62■■□□□ 1.05
RFX3P48380 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
RFX3P48380 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX3P48380 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX3P48380 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX3P48380 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.61■■□□□ 1.05
RFX3P48380 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.61■■□□□ 1.05
RFX3P48380 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.61■■□□□ 1.05
RFX3P48380 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.61■■□□□ 1.05
RFX3P48380 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFX3P48380 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.6■■□□□ 1.05
RFX3P48380 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RFX3P48380 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
RFX3P48380 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFX3P48380 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
RFX3P48380 AC019171.1-201ENST00000601251 1056 ntBASIC21.6■■□□□ 1.05
RFX3P48380 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.6■■□□□ 1.05
RFX3P48380 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.6■■□□□ 1.05
RFX3P48380 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFX3P48380 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFX3P48380 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFX3P48380 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
RFX3P48380 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RFX3P48380 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFX3P48380 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RFX3P48380 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.59■■□□□ 1.05
RFX3P48380 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFX3P48380 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
RFX3P48380 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.59■■□□□ 1.05
RFX3P48380 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.59■■□□□ 1.05
RFX3P48380 AC090877.2-201ENST00000558441 1738 ntBASIC21.59■■□□□ 1.05
RFX3P48380 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFX3P48380 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFX3P48380 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
RFX3P48380 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFX3P48380 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RFX3P48380 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.58■■□□□ 1.05
RFX3P48380 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFX3P48380 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFX3P48380 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
RFX3P48380 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFX3P48380 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFX3P48380 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.58■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms