Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC26.35■■□□□ 1.81
CIITAP33076 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC26.35■■□□□ 1.81
CIITAP33076 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CIITAP33076 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CIITAP33076 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.34■■□□□ 1.81
CIITAP33076 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.34■■□□□ 1.81
CIITAP33076 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.34■■□□□ 1.81
CIITAP33076 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CIITAP33076 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CIITAP33076 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CIITAP33076 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CIITAP33076 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CIITAP33076 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CIITAP33076 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CIITAP33076 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.33■■□□□ 1.81
CIITAP33076 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
CIITAP33076 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC26.33■■□□□ 1.81
CIITAP33076 AC092028.1-203ENST00000608262 953 ntBASIC26.33■■□□□ 1.81
CIITAP33076 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC26.33■■□□□ 1.81
CIITAP33076 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
CIITAP33076 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
CIITAP33076 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CIITAP33076 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC26.32■■□□□ 1.8
CIITAP33076 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC26.31■■□□□ 1.8
CIITAP33076 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CIITAP33076 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
CIITAP33076 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.31■■□□□ 1.8
CIITAP33076 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
CIITAP33076 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.31■■□□□ 1.8
CIITAP33076 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CIITAP33076 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC26.31■■□□□ 1.8
CIITAP33076 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.31■■□□□ 1.8
CIITAP33076 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
CIITAP33076 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.3■■□□□ 1.8
CIITAP33076 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CIITAP33076 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC26.3■■□□□ 1.8
CIITAP33076 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
CIITAP33076 HLA-L-211ENST00000482052 1765 ntBASIC26.29■■□□□ 1.8
CIITAP33076 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CIITAP33076 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC26.29■■□□□ 1.8
CIITAP33076 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CIITAP33076 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CIITAP33076 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CIITAP33076 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.28■■□□□ 1.8
CIITAP33076 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CIITAP33076 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CIITAP33076 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
CIITAP33076 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CIITAP33076 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC26.27■■□□□ 1.8
CIITAP33076 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.27■■□□□ 1.8
CIITAP33076 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CIITAP33076 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.27■■□□□ 1.8
CIITAP33076 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CIITAP33076 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CIITAP33076 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CIITAP33076 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.26■■□□□ 1.79
CIITAP33076 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.26■■□□□ 1.79
CIITAP33076 UNC93B8-201ENST00000511903 705 ntBASIC26.26■■□□□ 1.79
CIITAP33076 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CIITAP33076 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC26.25■■□□□ 1.79
CIITAP33076 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CIITAP33076 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CIITAP33076 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CIITAP33076 SNX5-217ENST00000606557 1087 ntBASIC26.25■■□□□ 1.79
CIITAP33076 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
CIITAP33076 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.24■■□□□ 1.79
CIITAP33076 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.24■■□□□ 1.79
CIITAP33076 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.24■■□□□ 1.79
CIITAP33076 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CIITAP33076 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC26.24■■□□□ 1.79
CIITAP33076 AC131274.2-201ENST00000580697 1507 ntBASIC26.24■■□□□ 1.79
CIITAP33076 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
CIITAP33076 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CIITAP33076 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.23■■□□□ 1.79
CIITAP33076 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.23■■□□□ 1.79
CIITAP33076 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.23■■□□□ 1.79
CIITAP33076 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.23■■□□□ 1.79
CIITAP33076 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.23■■□□□ 1.79
CIITAP33076 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.23■■□□□ 1.79
CIITAP33076 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CIITAP33076 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CIITAP33076 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CIITAP33076 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC26.23■■□□□ 1.79
CIITAP33076 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CIITAP33076 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CIITAP33076 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CIITAP33076 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CIITAP33076 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC26.23■■□□□ 1.79
CIITAP33076 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC26.23■■□□□ 1.79
CIITAP33076 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CIITAP33076 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
CIITAP33076 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC26.22■■□□□ 1.79
CIITAP33076 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CIITAP33076 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC26.22■■□□□ 1.79
CIITAP33076 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
CIITAP33076 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
CIITAP33076 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CIITAP33076 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CIITAP33076 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
CIITAP33076 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms