Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMS4P0CW20 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMS4P0CW20 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
LIMS4P0CW20 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.67■□□□□ 0.9
LIMS4P0CW20 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMS4P0CW20 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMS4P0CW20 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMS4P0CW20 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LIMS4P0CW20 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMS4P0CW20 AL117328.2-201ENST00000624617 1940 ntBASIC20.66■□□□□ 0.9
LIMS4P0CW20 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMS4P0CW20 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMS4P0CW20 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMS4P0CW20 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMS4P0CW20 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.66■□□□□ 0.9
LIMS4P0CW20 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
LIMS4P0CW20 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMS4P0CW20 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMS4P0CW20 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMS4P0CW20 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMS4P0CW20 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMS4P0CW20 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LIMS4P0CW20 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.65■□□□□ 0.9
LIMS4P0CW20 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.65■□□□□ 0.9
LIMS4P0CW20 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMS4P0CW20 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMS4P0CW20 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.65■□□□□ 0.9
LIMS4P0CW20 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMS4P0CW20 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
LIMS4P0CW20 SMPD5-203ENST00000639008 1464 ntBASIC20.64■□□□□ 0.89
LIMS4P0CW20 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
LIMS4P0CW20 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
LIMS4P0CW20 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMS4P0CW20 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMS4P0CW20 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.64■□□□□ 0.89
LIMS4P0CW20 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMS4P0CW20 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
LIMS4P0CW20 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMS4P0CW20 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMS4P0CW20 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMS4P0CW20 AC060814.1-201ENST00000554326 538 ntBASIC20.63■□□□□ 0.89
LIMS4P0CW20 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIMS4P0CW20 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMS4P0CW20 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LIMS4P0CW20 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMS4P0CW20 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMS4P0CW20 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMS4P0CW20 MIR3648-2-201ENST00000581792 180 ntBASIC20.62■□□□□ 0.89
LIMS4P0CW20 MIR3648-1-201ENST00000615959 180 ntBASIC20.62■□□□□ 0.89
LIMS4P0CW20 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.62■□□□□ 0.89
LIMS4P0CW20 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LIMS4P0CW20 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.61■□□□□ 0.89
LIMS4P0CW20 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
LIMS4P0CW20 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LIMS4P0CW20 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LIMS4P0CW20 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS4P0CW20 FOXO3B-201ENST00000395675 1928 ntBASIC20.61■□□□□ 0.89
LIMS4P0CW20 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.61■□□□□ 0.89
LIMS4P0CW20 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS4P0CW20 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS4P0CW20 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS4P0CW20 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS4P0CW20 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.61■□□□□ 0.89
LIMS4P0CW20 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS4P0CW20 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS4P0CW20 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS4P0CW20 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS4P0CW20 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS4P0CW20 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
LIMS4P0CW20 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
LIMS4P0CW20 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS4P0CW20 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS4P0CW20 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS4P0CW20 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS4P0CW20 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS4P0CW20 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS4P0CW20 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS4P0CW20 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS4P0CW20 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS4P0CW20 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.59■□□□□ 0.89
LIMS4P0CW20 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
LIMS4P0CW20 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LIMS4P0CW20 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS4P0CW20 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS4P0CW20 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
LIMS4P0CW20 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
LIMS4P0CW20 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LIMS4P0CW20 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIMS4P0CW20 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
LIMS4P0CW20 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIMS4P0CW20 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIMS4P0CW20 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.58■□□□□ 0.88
LIMS4P0CW20 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.88
LIMS4P0CW20 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.58■□□□□ 0.88
LIMS4P0CW20 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIMS4P0CW20 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMS4P0CW20 AC233723.2-201ENST00000623798 2106 ntBASIC20.57■□□□□ 0.88
LIMS4P0CW20 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIMS4P0CW20 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LIMS4P0CW20 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms