Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMS3P0CW19 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMS3P0CW19 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
LIMS3P0CW19 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.67■□□□□ 0.9
LIMS3P0CW19 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMS3P0CW19 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMS3P0CW19 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMS3P0CW19 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LIMS3P0CW19 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMS3P0CW19 AL117328.2-201ENST00000624617 1940 ntBASIC20.66■□□□□ 0.9
LIMS3P0CW19 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMS3P0CW19 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMS3P0CW19 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMS3P0CW19 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMS3P0CW19 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.66■□□□□ 0.9
LIMS3P0CW19 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
LIMS3P0CW19 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMS3P0CW19 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMS3P0CW19 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMS3P0CW19 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMS3P0CW19 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMS3P0CW19 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LIMS3P0CW19 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.65■□□□□ 0.9
LIMS3P0CW19 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.65■□□□□ 0.9
LIMS3P0CW19 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMS3P0CW19 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMS3P0CW19 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.65■□□□□ 0.9
LIMS3P0CW19 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMS3P0CW19 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
LIMS3P0CW19 SMPD5-203ENST00000639008 1464 ntBASIC20.64■□□□□ 0.89
LIMS3P0CW19 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
LIMS3P0CW19 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
LIMS3P0CW19 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMS3P0CW19 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMS3P0CW19 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.64■□□□□ 0.89
LIMS3P0CW19 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMS3P0CW19 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
LIMS3P0CW19 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMS3P0CW19 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMS3P0CW19 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMS3P0CW19 AC060814.1-201ENST00000554326 538 ntBASIC20.63■□□□□ 0.89
LIMS3P0CW19 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIMS3P0CW19 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIMS3P0CW19 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LIMS3P0CW19 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMS3P0CW19 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMS3P0CW19 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIMS3P0CW19 MIR3648-2-201ENST00000581792 180 ntBASIC20.62■□□□□ 0.89
LIMS3P0CW19 MIR3648-1-201ENST00000615959 180 ntBASIC20.62■□□□□ 0.89
LIMS3P0CW19 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.62■□□□□ 0.89
LIMS3P0CW19 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LIMS3P0CW19 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.61■□□□□ 0.89
LIMS3P0CW19 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
LIMS3P0CW19 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LIMS3P0CW19 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LIMS3P0CW19 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS3P0CW19 FOXO3B-201ENST00000395675 1928 ntBASIC20.61■□□□□ 0.89
LIMS3P0CW19 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.61■□□□□ 0.89
LIMS3P0CW19 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS3P0CW19 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS3P0CW19 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS3P0CW19 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS3P0CW19 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.61■□□□□ 0.89
LIMS3P0CW19 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS3P0CW19 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS3P0CW19 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIMS3P0CW19 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS3P0CW19 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS3P0CW19 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
LIMS3P0CW19 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
LIMS3P0CW19 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS3P0CW19 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS3P0CW19 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS3P0CW19 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS3P0CW19 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIMS3P0CW19 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS3P0CW19 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS3P0CW19 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS3P0CW19 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS3P0CW19 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.59■□□□□ 0.89
LIMS3P0CW19 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
LIMS3P0CW19 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LIMS3P0CW19 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS3P0CW19 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIMS3P0CW19 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
LIMS3P0CW19 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
LIMS3P0CW19 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LIMS3P0CW19 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIMS3P0CW19 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
LIMS3P0CW19 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIMS3P0CW19 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIMS3P0CW19 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.58■□□□□ 0.88
LIMS3P0CW19 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.88
LIMS3P0CW19 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.58■□□□□ 0.88
LIMS3P0CW19 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIMS3P0CW19 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.57■□□□□ 0.88
LIMS3P0CW19 AC233723.2-201ENST00000623798 2106 ntBASIC20.57■□□□□ 0.88
LIMS3P0CW19 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIMS3P0CW19 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LIMS3P0CW19 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms