Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TCRBV7S3A2A0A539 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
TCRBV7S3A2A0A539 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.68■■□□□ 1.38
TCRBV7S3A2A0A539 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TCRBV7S3A2A0A539 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
TCRBV7S3A2A0A539 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TCRBV7S3A2A0A539 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
TCRBV7S3A2A0A539 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.67■■□□□ 1.38
TCRBV7S3A2A0A539 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
TCRBV7S3A2A0A539 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TCRBV7S3A2A0A539 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
TCRBV7S3A2A0A539 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.67■■□□□ 1.38
TCRBV7S3A2A0A539 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
TCRBV7S3A2A0A539 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
TCRBV7S3A2A0A539 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TCRBV7S3A2A0A539 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
TCRBV7S3A2A0A539 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
TCRBV7S3A2A0A539 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.65■■□□□ 1.38
TCRBV7S3A2A0A539 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TCRBV7S3A2A0A539 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
TCRBV7S3A2A0A539 AC018755.3-202ENST00000596210 929 ntBASIC23.65■■□□□ 1.38
TCRBV7S3A2A0A539 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.65■■□□□ 1.38
TCRBV7S3A2A0A539 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TCRBV7S3A2A0A539 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TCRBV7S3A2A0A539 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
TCRBV7S3A2A0A539 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.64■■□□□ 1.38
TCRBV7S3A2A0A539 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
TCRBV7S3A2A0A539 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC23.64■■□□□ 1.38
TCRBV7S3A2A0A539 DUX4L9-201ENST00000449051 1259 ntBASIC23.64■■□□□ 1.37
TCRBV7S3A2A0A539 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
TCRBV7S3A2A0A539 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.64■■□□□ 1.37
TCRBV7S3A2A0A539 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
TCRBV7S3A2A0A539 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
TCRBV7S3A2A0A539 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
TCRBV7S3A2A0A539 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.63■■□□□ 1.37
TCRBV7S3A2A0A539 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.63■■□□□ 1.37
TCRBV7S3A2A0A539 RARRES2P2-201ENST00000394842 485 ntBASIC23.63■■□□□ 1.37
TCRBV7S3A2A0A539 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.63■■□□□ 1.37
TCRBV7S3A2A0A539 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
TCRBV7S3A2A0A539 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
TCRBV7S3A2A0A539 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
TCRBV7S3A2A0A539 AC087393.1-201ENST00000582896 145 ntBASIC23.62■■□□□ 1.37
TCRBV7S3A2A0A539 U85056.1-201ENST00000616429 682 ntBASIC23.62■■□□□ 1.37
TCRBV7S3A2A0A539 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
TCRBV7S3A2A0A539 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.62■■□□□ 1.37
TCRBV7S3A2A0A539 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TCRBV7S3A2A0A539 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.62■■□□□ 1.37
TCRBV7S3A2A0A539 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.62■■□□□ 1.37
TCRBV7S3A2A0A539 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
TCRBV7S3A2A0A539 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
TCRBV7S3A2A0A539 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TCRBV7S3A2A0A539 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.61■■□□□ 1.37
TCRBV7S3A2A0A539 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
TCRBV7S3A2A0A539 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
TCRBV7S3A2A0A539 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
TCRBV7S3A2A0A539 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.6■■□□□ 1.37
TCRBV7S3A2A0A539 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
TCRBV7S3A2A0A539 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
TCRBV7S3A2A0A539 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.6■■□□□ 1.37
TCRBV7S3A2A0A539 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TCRBV7S3A2A0A539 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TCRBV7S3A2A0A539 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 IDNK-203ENST00000405990 629 ntTSL 2 BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 HSD17B1P1-201ENST00000590052 955 ntBASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TCRBV7S3A2A0A539 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.58■■□□□ 1.37
TCRBV7S3A2A0A539 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC23.58■■□□□ 1.37
TCRBV7S3A2A0A539 MIR6765-201ENST00000614092 87 ntBASIC23.58■■□□□ 1.37
TCRBV7S3A2A0A539 AC068473.5-201ENST00000616428 2072 ntBASIC23.58■■□□□ 1.36
TCRBV7S3A2A0A539 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
TCRBV7S3A2A0A539 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
TCRBV7S3A2A0A539 DUSP8P5-201ENST00000422884 1815 ntBASIC23.57■■□□□ 1.36
TCRBV7S3A2A0A539 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
TCRBV7S3A2A0A539 AC090877.2-201ENST00000558441 1738 ntBASIC23.57■■□□□ 1.36
TCRBV7S3A2A0A539 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.57■■□□□ 1.36
TCRBV7S3A2A0A539 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC23.57■■□□□ 1.36
TCRBV7S3A2A0A539 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.57■■□□□ 1.36
TCRBV7S3A2A0A539 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TCRBV7S3A2A0A539 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms