Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 AL589739.1-201ENST00000607720 493 ntBASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 AP001059.3-201ENST00000619053 235 ntBASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 LINC00628-201ENST00000628516 1289 ntBASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 AF228730.6-201ENST00000641497 218 ntBASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 AL033527.5-202ENST00000641632 1098 ntBASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 AC084121.3-201ENST00000641716 218 ntBASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMA1Q9UHB6 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 GRK6P1-201ENST00000400595 1711 ntBASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 AL359258.3-201ENST00000622910 2331 ntBASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 AC015922.1-201ENST00000421102 1152 ntBASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 MIR6080-201ENST00000617359 66 ntBASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMA1Q9UHB6 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIMA1Q9UHB6 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIMA1Q9UHB6 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIMA1Q9UHB6 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIMA1Q9UHB6 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.96■□□□□ 0.3
LIMA1Q9UHB6 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
LIMA1Q9UHB6 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.96■□□□□ 0.3
LIMA1Q9UHB6 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
LIMA1Q9UHB6 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIMA1Q9UHB6 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIMA1Q9UHB6 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 CETN4P-206ENST00000642099 2168 ntBASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms