Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLN6Q9NWW5 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.26□□□□□ -0.13
CLN6Q9NWW5 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLN6Q9NWW5 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.25□□□□□ -0.13
CLN6Q9NWW5 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 AC117489.1-201ENST00000625169 3217 ntBASIC14.25□□□□□ -0.13
CLN6Q9NWW5 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 RPL5P21-201ENST00000404620 815 ntBASIC14.25□□□□□ -0.13
CLN6Q9NWW5 PHKG1P2-201ENST00000457537 863 ntBASIC14.25□□□□□ -0.13
CLN6Q9NWW5 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 MIR7706-201ENST00000613747 67 ntBASIC14.25□□□□□ -0.13
CLN6Q9NWW5 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CLN6Q9NWW5 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.24□□□□□ -0.13
CLN6Q9NWW5 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 AC061975.2-201ENST00000581722 295 ntBASIC14.24□□□□□ -0.13
CLN6Q9NWW5 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms