Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 AC105233.6-201ENST00000642093 218 ntBASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
TRIM39Q9HCM9 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.46■□□□□ 0.06
TRIM39Q9HCM9 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM39Q9HCM9 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM39Q9HCM9 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM39Q9HCM9 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 AC092127.1-201ENST00000567093 3455 ntBASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 AC127383.1-201ENST00000444697 1800 ntBASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 CICP13-201ENST00000422015 2789 ntBASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 DGCR5-201ENST00000399539 862 ntBASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 AC098850.1-201ENST00000419919 790 ntBASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM39Q9HCM9 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 AP005018.1-201ENST00000525475 301 ntBASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 AC092552.1-201ENST00000547243 906 ntBASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 TCAF2P1-201ENST00000291129 2421 ntBASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
TRIM39Q9HCM9 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
TRIM39Q9HCM9 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms